Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq3 107 2e-18 seq5 93.3 4e-14 >seq6 Length=2952248 Score = 134 bits (148), Expect = 1e-26 Identities = 301/449 (67%), Gaps = 21/449 (5%) Strand=Plus/Minus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| |||| || |||||| ||||||||| |||||||| ||| || || | || Sbjct 1057477 CGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATC 1057418 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | ||||||||||| || || |||||||| ||||| Sbjct 1057417 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCC 1057358 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACAC-TAGAGTCGATC 47316 | ||||| || |||||||| |||||||||| || || | ||| | |||||| Sbjct 1057357 CGTGACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAA- 1057299 Query 47317 AAAAGTTGGACGTGCCCA----CCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372 | | |||| ||||| | || || |||| || || | || ||| Sbjct 1057298 --------GCCCAGCCCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAG 1057247 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 | |||||| || | || || ||||||| | | |||| |||||||| | | ||| Sbjct 1057246 AAGGAGTTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATG 1057187 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATT 47492 | |||||||||| || ||||||||||||||||| || || | ||||| Sbjct 1057186 TGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTTGGCAA---CAAGAAG 1057130 Query 47493 TACCACACCGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACC 47549 ||| ||| || || | || ||||| || ||| | ||||| |||||| | ||||||||| Sbjct 1057129 TACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACC 1057070 Query 47550 AACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||| || || || Sbjct 1057069 AACTTCTTCGAGAAGCGCGTTGGTGACTA 1057041 >seq3 Length=5700105 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || ||||| ||||| || Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| | || | |||||||| || || || Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| |||| |||||| | | || || Sbjct 1597857 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTG-TCGATGGTGTCGGAAGATTCCAC 1597915 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| || || || || || ||||||||||| Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| || Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| |||| ||| |||| ||| || Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG-TCGATGGTATCCGACGACTCAAC 1598143 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || |||||||| || || || || || |||||||| Sbjct 1598144 TTCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| || || || || || ||||| || || ||| | Sbjct 1598228 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1598287 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| ||||||||||| ||||| |||||||||||||| ||| || ||||| | Sbjct 1598288 GATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 1598347 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| |||||| | |||||| || | ||| | || |||||||||| Sbjct 1598348 GTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCA 1598397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| || || || ||| || ||||| || ||| Sbjct 1598507 GTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCCTCGAGCTGCTTGCCA 1598566 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| ||||| ||||| ||||| ||| ||| || ||| Sbjct 1598567 GCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTC 1598626 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | |||| |||| |||||| | |||||| || | ||| | || |||||||| Sbjct 1598627 ACGTTG-TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1598679 >seq5 Length=4159236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 355176 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||||| |||||| || | ||| | || ||||| || || || || || || Sbjct 355177 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 355235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500627630960