Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4 138 1e-27
seq6 113 6e-20
>seq4
Length=4775223
Score = 138 bits (152), Expect = 1e-27
Identities = 838/1322 (63%), Gaps = 39/1322 (3%)
Strand=Plus/Minus
Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGG 115922
|||||||| || ||||| || ||| ||| | ||| |||||||| | ||||| ||
Sbjct 4664917 TTGACAACCTGGAATTCACCGGCCAGGACGCGGCG-AGAGTAGATGTTCGATGTGTAAGG 4664859
Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCATGGGTGCCA 115981
||| |||||||| ||| ||| |||| | | || || ||||| || ||||||||||| |
Sbjct 4664858 CTCGAAGCACTCGTTGAAACC-AAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGA 4664800
Query 115982 TGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGT 116041
||| || |||||||| ||| | ||| |||| ||| ||||||||
Sbjct 4664799 CGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCC 4664740
Query 116042 AGTTGAGCTTTG----TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097
|| || | || ||| | |||||| || ||||||||||||| || || ||
Sbjct 4664739 AGA-GATCGGTGGGAGTCTTG---TTCCACATGTCGTACTGGAGGATACCCTGAGAGGCA 4664684
Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 116154
|| |||| || |||||||| || || | | || || | ||| ||| ||
Sbjct 4664683 GGGCTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATCGAG---GCA 4664627
Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 116214
|||||| || || || || ||||| || || | || | |||||||||| |
Sbjct 4664626 GTGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGG 4664567
Query 116215 GAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274
|| || || | | ||| | || |||| || ||||| | |||||| | ||
Sbjct 4664566 GAGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCA 4664507
Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTA 116331
|| ||||| || | ||| || ||||| ||| ||| ||| || || || |
Sbjct 4664506 ATGGGGCGGTGACGCATGTTGCTCTTTCTAGC---CTCAGGCACCGGGTAGTGGTTGATG 4664450
Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 116391
||||| | | | || | || || | |||| |||| || || ||||| | | |
Sbjct 4664449 TCGATGATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAG 4664390
Query 116392 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 116451
|| || | | |||| | | || | | ||||| || | || |||| || ||
Sbjct 4664389 TCGTAAATACCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAG 4664330
Query 116452 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 116511
|| | | ||||| |||||||||| | || || || | || || || |
Sbjct 4664329 ACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGA 4664270
Query 116512 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATAT 116571
|||||||| | ||||| || || ||| ||| || |||||||| | ||| |
Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAG 4664210
Query 116572 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCAC 116630
|| | || ||||| ||| | || ||||||||| | ||| | | || ||| | || ||
Sbjct 4664209 GGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-AC 4664151
Query 116631 AGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC 116690
||| || | | || ||||||| |||||||| |||||| ||||| ||||| || ||
Sbjct 4664150 AGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCC 4664091
Query 116691 C-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCC 116748
||| | |||| || || || || || ||| || | ||| | ||| || |
Sbjct 4664090 ATACA-CGTCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTC 4664033
Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 116808
| ||| || ||||||||||| ||||| || |||||||| || |||| || || || |
Sbjct 4664032 TGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCG 4663973
Query 116809 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 116868
|| |||| || | || || || || | || | || | | ||| ||||||
Sbjct 4663972 CGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGC 4663913
Query 116869 CACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATAC 116925
||||| || ||||| | || | | ||| ||| ||| |||||| || ||
Sbjct 4663912 CACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAG 4663853
Query 116926 CTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTG-GCCATTTGT 116984
| || || ||| | ||||| ||||| ||||| | ||||| | | | ||| || ||
Sbjct 4663852 CGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCAT-TGCTGGTGCCGTTGGT 4663794
Query 116985 CCCCCGAATACGAGACT--TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCT 117042
|| ||| | || | |||| | || ||||| || | ||| || || ||
Sbjct 4663793 ACCGGCAAT--GTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCA 4663736
Query 117043 GCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 117102
|| ||| ||||| ||||| | |||| || ||||||| || ||||| |||
Sbjct 4663735 GCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCC 4663676
Query 117103 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAG 117162
|||| | ||||||||||||| | || || ||| | || || || ||||||||
Sbjct 4663675 TCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGTTCCGGCGTTGAAC 4663616
Query 117163 AG 117164
||
Sbjct 4663615 AG 4663614
>seq6
Length=2952248
Score = 113 bits (124), Expect = 6e-20
Identities = 301/453 (66%), Gaps = 28/453 (6%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || ||||||||||||||||| ||||| || | ||| ||| ||||||||
Sbjct 1057040 GTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCAT 1057099
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || || ||||| | | ||| | | || ||| || | | || ||
Sbjct 1057100 GAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACC--AGCAGG 1057157
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | |||| |||| ||||||| |||| | | |||||| || | |||
Sbjct 1057158 CGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCG 1057217
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| ||||| ||| || |||| ||||||| || |||||||| || ||| ||
Sbjct 1057218 ACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCG-GTA--AT---- 1057270
Query 127469 TGAATAGTGTCCAC---CCCAGGTCTATTGCGTAAAGTCTTGAAG----AGTTCCACAG- 127520
||| | || || | |||| || || | | ||||| | || | |||
Sbjct 1057271 --AATCTTCTCGACGGCCTCAGGGCTGG-GCTTCGA--CTTGATGTGCGAGAACAGCAGG 1057325
Query 127521 ----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576
|||| || ||| | |||||||||||||||||||| || ||||||||| ||
Sbjct 1057326 CAGGCAAAGTCGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGG 1057385
Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636
|| ||||||||||| |||||||| | |||||| || | || ||||| |||||||
Sbjct 1057386 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAG 1057445
Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGC 127669
|| ||||| || ||||| |||| ||||||
Sbjct 1057446 ATACCCTCGACGGCGGCGAAGGCAATCAGACGC 1057478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506977603640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |