Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq6 113 6e-20 >seq4 Length=4775223 Score = 138 bits (152), Expect = 1e-27 Identities = 838/1322 (63%), Gaps = 39/1322 (3%) Strand=Plus/Minus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGG 115922 |||||||| || ||||| || ||| ||| | ||| |||||||| | ||||| || Sbjct 4664917 TTGACAACCTGGAATTCACCGGCCAGGACGCGGCG-AGAGTAGATGTTCGATGTGTAAGG 4664859 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCATGGGTGCCA 115981 ||| |||||||| ||| ||| |||| | | || || ||||| || ||||||||||| | Sbjct 4664858 CTCGAAGCACTCGTTGAAACC-AAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGA 4664800 Query 115982 TGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGT 116041 ||| || |||||||| ||| | ||| |||| ||| |||||||| Sbjct 4664799 CGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCC 4664740 Query 116042 AGTTGAGCTTTG----TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || || | || ||| | |||||| || ||||||||||||| || || || Sbjct 4664739 AGA-GATCGGTGGGAGTCTTG---TTCCACATGTCGTACTGGAGGATACCCTGAGAGGCA 4664684 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 116154 || |||| || |||||||| || || | | || || | ||| ||| || Sbjct 4664683 GGGCTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATCGAG---GCA 4664627 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 116214 |||||| || || || || ||||| || || | || | |||||||||| | Sbjct 4664626 GTGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGG 4664567 Query 116215 GAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || || || | | ||| | || |||| || ||||| | |||||| | || Sbjct 4664566 GAGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCA 4664507 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTA 116331 || ||||| || | ||| || ||||| ||| ||| ||| || || || | Sbjct 4664506 ATGGGGCGGTGACGCATGTTGCTCTTTCTAGC---CTCAGGCACCGGGTAGTGGTTGATG 4664450 Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 116391 ||||| | | | || | || || | |||| |||| || || ||||| | | | Sbjct 4664449 TCGATGATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAG 4664390 Query 116392 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 116451 || || | | |||| | | || | | ||||| || | || |||| || || Sbjct 4664389 TCGTAAATACCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAG 4664330 Query 116452 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 116511 || | | ||||| |||||||||| | || || || | || || || | Sbjct 4664329 ACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGA 4664270 Query 116512 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATAT 116571 |||||||| | ||||| || || ||| ||| || |||||||| | ||| | Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAG 4664210 Query 116572 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCAC 116630 || | || ||||| ||| | || ||||||||| | ||| | | || ||| | || || Sbjct 4664209 GGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-AC 4664151 Query 116631 AGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC 116690 ||| || | | || ||||||| |||||||| |||||| ||||| ||||| || || Sbjct 4664150 AGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCC 4664091 Query 116691 C-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCC 116748 ||| | |||| || || || || || ||| || | ||| | ||| || | Sbjct 4664090 ATACA-CGTCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTC 4664033 Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 116808 | ||| || ||||||||||| ||||| || |||||||| || |||| || || || | Sbjct 4664032 TGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCG 4663973 Query 116809 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 116868 || |||| || | || || || || | || | || | | ||| |||||| Sbjct 4663972 CGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGC 4663913 Query 116869 CACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATAC 116925 ||||| || ||||| | || | | ||| ||| ||| |||||| || || Sbjct 4663912 CACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAG 4663853 Query 116926 CTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTG-GCCATTTGT 116984 | || || ||| | ||||| ||||| ||||| | ||||| | | | ||| || || Sbjct 4663852 CGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCAT-TGCTGGTGCCGTTGGT 4663794 Query 116985 CCCCCGAATACGAGACT--TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCT 117042 || ||| | || | |||| | || ||||| || | ||| || || || Sbjct 4663793 ACCGGCAAT--GTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCA 4663736 Query 117043 GCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 117102 || ||| ||||| ||||| | |||| || ||||||| || ||||| ||| Sbjct 4663735 GCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCC 4663676 Query 117103 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAG 117162 |||| | ||||||||||||| | || || ||| | || || || |||||||| Sbjct 4663675 TCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGTTCCGGCGTTGAAC 4663616 Query 117163 AG 117164 || Sbjct 4663615 AG 4663614 >seq6 Length=2952248 Score = 113 bits (124), Expect = 6e-20 Identities = 301/453 (66%), Gaps = 28/453 (6%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 1057040 GTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCAT 1057099 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | ||| | | || ||| || | | || || Sbjct 1057100 GAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACC--AGCAGG 1057157 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| |||| | | |||||| || | ||| Sbjct 1057158 CGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCG 1057217 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| ||| || |||| ||||||| || |||||||| || ||| || Sbjct 1057218 ACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCG-GTA--AT---- 1057270 Query 127469 TGAATAGTGTCCAC---CCCAGGTCTATTGCGTAAAGTCTTGAAG----AGTTCCACAG- 127520 ||| | || || | |||| || || | | ||||| | || | ||| Sbjct 1057271 --AATCTTCTCGACGGCCTCAGGGCTGG-GCTTCGA--CTTGATGTGCGAGAACAGCAGG 1057325 Query 127521 ----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 |||| || ||| | |||||||||||||||||||| || ||||||||| || Sbjct 1057326 CAGGCAAAGTCGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGG 1057385 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||||||||| |||||||| | |||||| || | || ||||| ||||||| Sbjct 1057386 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAG 1057445 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGC 127669 || ||||| || ||||| |||| |||||| Sbjct 1057446 ATACCCTCGACGGCGGCGAAGGCAATCAGACGC 1057478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506977603640