Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq4 107 3e-18 >seq6 Length=2952248 Score = 197 bits (218), Expect = 2e-45 Identities = 341/495 (69%), Gaps = 3/495 (1%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||||| |||| ||||| Sbjct 1057055 CTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTT 1057114 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || ||| ||| |||| || |||||| |||||| | ||| || || || || Sbjct 1057115 GGTCGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACCAGCAGGCGGTCGGCGACGAACTC 1057174 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| | | ||| || |||||||| ||||| ||||| |||| Sbjct 1057175 GATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCGACGGGCAGCGCATCCGT 1057234 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||||||| || || || || ||||| | ||||| | ||| || | Sbjct 1057235 GAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCTCGACGGCCTCAGGGCT 1057294 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 ||||| | | || || | ||||| ||||| ||||||||| ||||| |||||| Sbjct 1057295 GGGCTT---CGACTTGATGTGCGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATTCCCTC 1057351 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 ||| || ||||||| |||||| || | | | ||||| ||||||| |||||| ||||| Sbjct 1057352 GTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAGACCACGCTTCTTGAG 1057411 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 ||| || |||| || |||| ||||| || ||||| ||||| ||||| || || || | Sbjct 1057412 CCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAAT 1057471 Query 160069 GAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTT 160128 || | | | | || | | ||| |||| | |||| | ||||| || ||||| Sbjct 1057472 CAGACGCGAAGCGAAGGTAGAGTTCTTGTCGCAGATCCAGCGGAGAGCCCAGTCGGCCTT 1057531 Query 160129 CTTTGCGATGCACGG 160143 ||| |||||| || Sbjct 1057532 CTTCTTGATGCAGGG 1057546 >seq4 Length=4775223 Score = 107 bits (118), Expect = 3e-18 Identities = 451/692 (65%), Gaps = 19/692 (3%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || || |||||||||| | || |||||| | | | | || |||||||| Sbjct 4665268 TCTTGGTCGACAGTAAACTGAATGG-GCGCAGCGGCAGCCTGGGTACGGAGGTAGTACAT 4665210 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| ||||| || ||| || | |||||| || | | |||| || | Sbjct 4665209 GCCGGTCTTGAGGCCGAGCTTCCATCCAGCGAAGTGCATAGAGGTAATCTTGCCCATCGT 4665150 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| |||||| ||||| || ||||| ||||| ||| ||||| || || || | Sbjct 4665149 AGGGTCCTTCATGTGGATGTTGAGGGACTGCGACTGGTCAATG-AAGGCACCACGGTCGG 4665091 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTG 204073 | ||||| | || ||||| ||| |||| ||||| || |||||| | | || || || Sbjct 4665090 CAGCCATCTGGACGATGGTGCGCTGAGAAAGTTCCCAGACAGTCTTGTAGAGCGCCT-TG 4665032 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| | || | | | | || ||| || || ||| | || || | | | Sbjct 4665031 ATGTCGTCGGGAATGT-TGGGAATGTGCTGAATGGAACCGCTAGAAGCGATGATGCGGTT 4664973 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | || ||| || ||| | |||| | | || || ||| || || |||||||| Sbjct 4664972 CTTCATCTGGTCAGACCATA-GCCCGAGGTCGACCAAGTCCTTCAGGAGCCAGGGGTTGA 4664914 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || |||| ||| || | || | | | | ||| ||| | || |||| Sbjct 4664913 CAACCTGGAATTCACCGGCCAGGACGCGGCGAGAGTAGATGTTCGATGTGTAAGGCTCGA 4664854 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||| || | ||||||| || ||| || |||||||| || | ||||| Sbjct 4664853 AGCACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGACGAGCA 4664794 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCA 204368 | |||||||| | ||||| | | | | |||||| |||||| | | | Sbjct 4664793 GAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCCAGAG-A 4664735 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 ||| |||| || | |||||||||| |||| | ||| || ||| | | ||||| | Sbjct 4664734 TCG--GTGGGAGTCTTGTTCCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGGCTAC 4664677 Query 204429 CCTTGTACGTCGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCG 204487 ||| | ||||| |||||| | | ||| || |||| | |||||| | | ||| Sbjct 4664676 CCTGGAACGTCTCATAAGGACCGTGGAGCTT-GGCAAGCTCGATCGAGGCAGTGAGGGCA 4664618 Query 204488 TGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 || ||| |||||||| |||||||| | ||| Sbjct 4664617 GCATGGTAAATGGTCTCGAAGATCTGGATGTT 4664586 Score = 96.9 bits (106), Expect = 6e-15 Identities = 313/473 (66%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 204928 ATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTT 204987 || || |||||| ||||||||| ||| ||||||||||| |||||| || | || | Sbjct 4664258 ATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGT 4664199 Query 204988 CTCCATCTGAGA-TCGCAGAATGTGGGTCCACAA-TTC-GCGAGCCTCCA--CTTGCTTC 205042 ||| | |||| ||| ||||| | ||||| ||| ||| | || || || | Sbjct 4664198 CTCGACTTGAGCCTCG-AGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCGCGGC 4664140 Query 205043 -ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACAC 205101 ||| | ||| | |||||| | ||| || ||| | || || || ||||| Sbjct 4664139 CACGGCCCTCCTT-----CTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACAC 4664085 Query 205102 GTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCA 205160 ||| ||| || || |||| ||||| ||||| || | ||| | | | || || | Sbjct 4664084 GTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCG-A 4664026 Query 205161 CCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTC 205220 | | || ||| ||||||||| ||||| || |||| ||||| ||||| || | | | Sbjct 4664025 CACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTT 4663966 Query 205221 CGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGC 205279 | || | ||| ||||||| | ||| || || | | | | ||||||||||||||| Sbjct 4663965 CCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAA-CTGAACACATCGGCGTGCCACGGC 4663907 Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTC 205339 || | | | ||| | ||||| || | |||||| || |||||||| || ||| | Sbjct 4663906 TCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCA 4663847 Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 | |||| | || || ||||| || | |||||| ||| ||| ||||| || Sbjct 4663846 GTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGT 4663794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154911756240