Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 138 3e-27 seq5 105 2e-17 seq2 93.3 1e-13 >seq3 Length=5700105 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| || | ||||||||| | | ||| | ||||| Sbjct 1597752 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCATCC 1597811 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||| |||||||||||||||||||| || || || ||| Sbjct 1597812 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 1597871 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | ||| || || | |||||| ||| Sbjct 1597872 TGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGCGTGATGGTC 1597931 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || Sbjct 1597932 TTGCCAGTGAGGGTCTTGACGAAAATCTG 1597960 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||||||||| |||||||| |||| ||||||||| | | ||| Sbjct 1597971 CGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTG 1598030 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||||||||| || || Sbjct 1598031 CGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCC 1598090 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||| || | | || || ||||| Sbjct 1598091 TCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACTTCCAAG 1598150 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 1598151 GTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTG 1598188 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| |||| |||||| || | ||| || | ||||| Sbjct 1598492 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCC 1598551 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| ||||||||||| |||||| ||| ||||| ||| Sbjct 1598552 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCC 1598611 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || || | ||||| ||| Sbjct 1598612 TGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 1598671 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 1598672 TTGCCGGTGA 1598681 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||||||||| |||||| |||| ||||||||| | || || Sbjct 1598199 CGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTA 1598258 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| || |||||||| |||||| ||| || Sbjct 1598259 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCC 1598318 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| |||||| | | || || |||| Sbjct 1598319 TCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCCAGG 1598378 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 1598379 GTGATGGTCTTGCCGGT 1598395 >seq5 Length=4159236 Score = 105 bits (116), Expect = 2e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | || || | ||||| || |||||||| |||||||||| Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| |||||||| || || || | Sbjct 355175 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 355234 Query 199620 A 199620 | Sbjct 355235 A 355235 >seq2 Length=6116231 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| ||||||||| | | || | ||||| Sbjct 4767931 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCC 4767872 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || |||||||| ||||||||||||||||| Sbjct 4767871 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGG 4767831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921161956943