Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 1e-28
seq5 131 2e-25
seq2 91.5 2e-13
>seq3
Length=5700105
Score = 141 bits (156), Expect = 1e-28
Identities = 163/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||||| || | || |||||| ||||| |||||||| || |||||||| |
Sbjct 1597976 ACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACC 1598035
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || |||||||| || ||||| |||| |||||||||||| | || | | ||||||
Sbjct 1598036 GTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTT 1598095
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| |||||| ||| | | | || || ||| || || |||| ||||
Sbjct 1598096 GTCCTGAATCTTGCTCTTGA-CGTTGTCGATGGTATCCGACGACTCAACTTCCAAGGTGA 1598154
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| || ||||| || || ||||| |||||
Sbjct 1598155 TGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191
Score = 123 bits (136), Expect = 3e-23
Identities = 170/235 (72%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | ||| || | | ||| | ||||| |||| || |||||| || || |||||
Sbjct 1597730 TTACTGGCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTA 1597789
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
||| || |||||||| | || || |||||||| || ||||| || | |||||||||||
Sbjct 1597790 GTCCGAGAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTC 1597849
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538
| || | | |||||||||| |||||| |||| | ||| | | | |||||| |
Sbjct 1597850 CGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGTTGTCGATGGTGTCGGAAG 1597908
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||| || | ||||||||| ||||| || || || || || || || |||||
Sbjct 1597909 ATTCCACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 122 bits (134), Expect = 1e-22
Identities = 132/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| ||||| ||||||||||| || || || |||| |||||||||||||||
Sbjct 1598223 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 1598282
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
||||| |||| ||||||||| || | || | || ||||||||| |||||| ||||
Sbjct 1598283 GCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTG 1598342
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | | ||||| || || || |||| |||||||| ||||| ||||
Sbjct 1598343 ACATTGTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCA 1598397
Score = 86.0 bits (94), Expect = 7e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || || | || || | || |||||||||||||| |||||
Sbjct 1598512 CTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 1598571
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || ||||| ||| |||||| |||| | |||
Sbjct 1598572 GATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTCA-CGT 1598630
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| ||| || || || | |||||||| ||||| ||
Sbjct 1598631 TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1598679
>seq5
Length=4159236
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| | || |||||||||||||||||||| |
Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||||||||| | || | || |||||||||| |||||| |||||| |
Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| |||||||| || || || || |
Sbjct 355175 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 355234
Query 46584 AG 46585
||
Sbjct 355235 AG 355236
>seq2
Length=6116231
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/119 (77%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || || | || |||||||||||||| |||||
Sbjct 4767911 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 4767852
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520
|||| ||||||||||| | || | || ||||||||| || || || || | ||||
Sbjct 4767851 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC--TGTTCGTCATCGTCAGCG 4767795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238195101080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |