Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq5 131 2e-25 seq2 91.5 2e-13 >seq3 Length=5700105 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | || |||||| ||||| |||||||| || |||||||| | Sbjct 1597976 ACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACC 1598035 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| |||| |||||||||||| | || | | |||||| Sbjct 1598036 GTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTT 1598095 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| |||||| ||| | | | || || ||| || || |||| |||| Sbjct 1598096 GTCCTGAATCTTGCTCTTGA-CGTTGTCGATGGTATCCGACGACTCAACTTCCAAGGTGA 1598154 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| || || ||||| ||||| Sbjct 1598155 TGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 123 bits (136), Expect = 3e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||| | ||||| |||| || |||||| || || ||||| Sbjct 1597730 TTACTGGCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTA 1597789 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || |||||||| | || || |||||||| || ||||| || | ||||||||||| Sbjct 1597790 GTCCGAGAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTC 1597849 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||||||| |||||| |||| | ||| | | | |||||| | Sbjct 1597850 CGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGTTGTCGATGGTGTCGGAAG 1597908 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| || | ||||||||| ||||| || || || || || || || ||||| Sbjct 1597909 ATTCCACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||||| || || || |||| ||||||||||||||| Sbjct 1598223 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 1598282 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||| ||||||||| || | || | || ||||||||| |||||| |||| Sbjct 1598283 GCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTG 1598342 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | | ||||| || || || |||| |||||||| ||||| |||| Sbjct 1598343 ACATTGTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCA 1598397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || | || || | || |||||||||||||| ||||| Sbjct 1598512 CTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 1598571 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||| ||| |||||| |||| | ||| Sbjct 1598572 GATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTCA-CGT 1598630 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | |||||| ||| || || || | |||||||| ||||| || Sbjct 1598631 TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1598679 >seq5 Length=4159236 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || |||||||||||||||||||| | Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| |||||| | Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| |||||||| || || || || | Sbjct 355175 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 355234 Query 46584 AG 46585 || Sbjct 355235 AG 355236 >seq2 Length=6116231 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || | || |||||||||||||| ||||| Sbjct 4767911 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 4767852 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 |||| ||||||||||| | || | || ||||||||| || || || || | |||| Sbjct 4767851 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC--TGTTCGTCATCGTCAGCG 4767795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238195101080