Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6 277 2e-69
seq3 145 8e-30
seq5 122 9e-23
>seq6
Length=2952248
Score = 277 bits (306), Expect = 2e-69
Identities = 588/877 (67%), Gaps = 68/877 (8%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | || ||| | ||| || || |||||||||
Sbjct 1057056 TTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1057115
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||||| ||| || | || | || ||||| | |||||| |||||||||
Sbjct 1057116 GTCGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACCAGCAGGCGGTCGGCGACGAACTCG 1057175
Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803
||||| || ||||| | || || | | | |||||||| || |||||||| || ||
Sbjct 1057176 ATGTACTGGCACATGAGGTTGGCGTTCATG-CCCAGCAGGGCGACGGGCAGCGCATCCGT 1057234
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
||| || | |||||| | || || ||||| | || | | ||| | | | |||
Sbjct 1057235 GAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCTCGACGGCCTCAGGGCT 1057294
Query 132864 CGGCCGTTGCACCAAATG--CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921
||| || || ||| | ||||| || ||| ||||||||| |||| ||||||
Sbjct 1057295 GGGC--TTCGACTTGATGTGCGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATTCCCTCG 1057352
Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981
|| | ||| ||||| ||||| ||| || | |||||||||||| || || || ||||||
Sbjct 1057353 TCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAGACCACGCTTCTTGAGC 1057412
Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041
|| || |||| |||||| ||| ||||||| ||||||||||| ||||| || | |
Sbjct 1057413 CAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAATC 1057472
Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT- 133100
|| ||| |||| || | | ||| | ||||||||| || ||||| ||||||||
Sbjct 1057473 AGACGCGAAGCGAAGGTAGAGTTCTTGTCGCAGATCCAGCGGAGAGCCCAGTCGGCCTTC 1057532
Query 133101 TTCTT--------------TGAC---------------GCACGGCATC------------ 133119
||||| |||| || | |||||
Sbjct 1057533 TTCTTGATGCAGGGAACTGTGACGCGTTAGTGATCCAAGCTCTGCATCATCATATGTGGT 1057592
Query 133120 ----------GTT-TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--AC 133166
||| ||||| ||||| ||| | | |||| | || | || ||| |
Sbjct 1057593 ACAACGTACTGTTGTCGATAGCGTTGAAC--AGGTAGTTGCGCTGCTTGGGCTCGCTGAT 1057650
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||| ||| ||| || | || ||||| | ||||||||| ||| || ||
Sbjct 1057651 GTACGTGTCGATCAGGAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 1057710
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285
|||||| ||||| || |||||| | ||| || || |||| ||| ||||||||||| |
Sbjct 1057711 GCCGTAGAAGCAGCGGGCCTCGGGAATCTGGACCTC-GGAGCTGAAGCGCTCGACCAGGT 1057769
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| ||||| |||||||| || |||||||| || || || |||||| |||||| ||
Sbjct 1057770 TCTCGTTCACGATGCCATCCGACGCGGCGAAGAAAGCGAGGACGTGCGAGATGAAGAAGC 1057829
Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||| | |||||| | ||| | ||||||| | ||||||||| ||||| | |||||
Sbjct 1057830 GCTCATCGTCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCCT 1057889
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || |||||||| || ||||||||
Sbjct 1057890 CAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 1057926
>seq3
Length=5700105
Score = 145 bits (160), Expect = 8e-30
Identities = 173/231 (75%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| |||| || || | ||
Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| | |||| || |||| ||||| ||||| || ||| | ||||
Sbjct 1597903 GACACCATCGACAACG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACC 1597846
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||||| ||| || || |||||||| || | ||||| ||| |||||||
Sbjct 1597845 AGCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACA 1597786
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||| || ||||| |||| ||||| |||||||| ||| || | || ||||
Sbjct 1597785 ACATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGCC 1597735
Score = 131 bits (144), Expect = 2e-25
Identities = 162/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| ||||| ||||||||| | || || ||| | |
Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | |||| | |||| || || | ||||| ||||| || ||| | ||||
Sbjct 1598131 GATACCATCGACAACG--TCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACC 1598074
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | |||||| || |||||||| |||| ||||| ||| |||||||
Sbjct 1598073 AGCAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACA 1598014
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| ||||| | || || || |||||||||||
Sbjct 1598013 ACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGT 1597976
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| ||||| ||||||||| | || |||||| || | |||| | | | | | ||
Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| ||||| | || || ||||| || || | ||| |||||
Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
||||| || |||| || ||||| ||||||||||||||| |||||
Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGA 1598229
Score = 82.4 bits (90), Expect = 8e-11
Identities = 130/183 (71%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| | || |||||| | |||||| | | | |||| | ||
Sbjct 1598681 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACG--TGAA 1598624
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| || || || || ||||| | || || ||||| || || | ||| ||
Sbjct 1598623 GAGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGG 1598564
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | || ||| | || ||||||||||| ||||| |||| ||
Sbjct 1598563 CAAGCAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCT 1598504
Query 38444 GCA 38446
||
Sbjct 1598503 TCA 1598501
>seq5
Length=4159236
Score = 122 bits (134), Expect = 9e-23
Identities = 139/183 (76%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | |
Sbjct 355235 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 355176
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 355175 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCC 355118
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| |
Sbjct 355117 TGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGA 355058
Query 38431 AGG 38433
|||
Sbjct 355057 AGG 355055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172618687360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |