Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 277 2e-69 seq3 145 8e-30 seq5 122 9e-23 >seq6 Length=2952248 Score = 277 bits (306), Expect = 2e-69 Identities = 588/877 (67%), Gaps = 68/877 (8%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 1057056 TTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1057115 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||||| ||| || | || | || ||||| | |||||| ||||||||| Sbjct 1057116 GTCGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACCAGCAGGCGGTCGGCGACGAACTCG 1057175 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 ||||| || ||||| | || || | | | |||||||| || |||||||| || || Sbjct 1057176 ATGTACTGGCACATGAGGTTGGCGTTCATG-CCCAGCAGGGCGACGGGCAGCGCATCCGT 1057234 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 ||| || | |||||| | || || ||||| | || | | ||| | | | ||| Sbjct 1057235 GAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCTCGACGGCCTCAGGGCT 1057294 Query 132864 CGGCCGTTGCACCAAATG--CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 ||| || || ||| | ||||| || ||| ||||||||| |||| |||||| Sbjct 1057295 GGGC--TTCGACTTGATGTGCGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATTCCCTCG 1057352 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | ||| ||||| ||||| ||| || | |||||||||||| || || || |||||| Sbjct 1057353 TCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAGACCACGCTTCTTGAGC 1057412 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || |||| |||||| ||| ||||||| ||||||||||| ||||| || | | Sbjct 1057413 CAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAATC 1057472 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT- 133100 || ||| |||| || | | ||| | ||||||||| || ||||| |||||||| Sbjct 1057473 AGACGCGAAGCGAAGGTAGAGTTCTTGTCGCAGATCCAGCGGAGAGCCCAGTCGGCCTTC 1057532 Query 133101 TTCTT--------------TGAC---------------GCACGGCATC------------ 133119 ||||| |||| || | ||||| Sbjct 1057533 TTCTTGATGCAGGGAACTGTGACGCGTTAGTGATCCAAGCTCTGCATCATCATATGTGGT 1057592 Query 133120 ----------GTT-TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--AC 133166 ||| ||||| ||||| ||| | | |||| | || | || ||| | Sbjct 1057593 ACAACGTACTGTTGTCGATAGCGTTGAAC--AGGTAGTTGCGCTGCTTGGGCTCGCTGAT 1057650 Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| ||| ||| || | || ||||| | ||||||||| ||| || || Sbjct 1057651 GTACGTGTCGATCAGGAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 1057710 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 |||||| ||||| || |||||| | ||| || || |||| ||| ||||||||||| | Sbjct 1057711 GCCGTAGAAGCAGCGGGCCTCGGGAATCTGGACCTC-GGAGCTGAAGCGCTCGACCAGGT 1057769 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||| |||||||| || |||||||| || || || |||||| |||||| || Sbjct 1057770 TCTCGTTCACGATGCCATCCGACGCGGCGAAGAAAGCGAGGACGTGCGAGATGAAGAAGC 1057829 Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||| | |||||| | ||| | ||||||| | ||||||||| ||||| | ||||| Sbjct 1057830 GCTCATCGTCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCCT 1057889 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || |||||||| || |||||||| Sbjct 1057890 CAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 1057926 >seq3 Length=5700105 Score = 145 bits (160), Expect = 8e-30 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| |||| || || | || Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| ||||| || ||| | |||| Sbjct 1597903 GACACCATCGACAACG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACC 1597846 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| || || |||||||| || | ||||| ||| ||||||| Sbjct 1597845 AGCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACA 1597786 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||| || ||||| |||| ||||| |||||||| ||| || | || |||| Sbjct 1597785 ACATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGCC 1597735 Score = 131 bits (144), Expect = 2e-25 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| ||||||||| | || || ||| | | Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || || | ||||| ||||| || ||| | |||| Sbjct 1598131 GATACCATCGACAACG--TCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACC 1598074 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | |||||| || |||||||| |||| ||||| ||| ||||||| Sbjct 1598073 AGCAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACA 1598014 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | || || || ||||||||||| Sbjct 1598013 ACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGT 1597976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| ||||||||| | || |||||| || | |||| | | | | | || Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| ||||| | || || ||||| || || | ||| ||||| Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||| || |||| || ||||| ||||||||||||||| ||||| Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGA 1598229 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| | || |||||| | |||||| | | | |||| | || Sbjct 1598681 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACG--TGAA 1598624 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| || || || || ||||| | || || ||||| || || | ||| || Sbjct 1598623 GAGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGG 1598564 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | || ||| | || ||||||||||| ||||| |||| || Sbjct 1598563 CAAGCAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCT 1598504 Query 38444 GCA 38446 || Sbjct 1598503 TCA 1598501 >seq5 Length=4159236 Score = 122 bits (134), Expect = 9e-23 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | | Sbjct 355235 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 355176 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 355175 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCC 355118 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| | Sbjct 355117 TGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGA 355058 Query 38431 AGG 38433 ||| Sbjct 355057 AGG 355055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172618687360