Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 188 9e-43 seq2 136 5e-27 seq1 91.5 2e-13 >seq3 Length=5700105 Score = 188 bits (208), Expect = 9e-43 Identities = 381/564 (68%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || || || | ||||| || ||||| || Sbjct 1615605 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATGCCC 1615664 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | ||| ||||| || |||||||||||||| || || || || ||| Sbjct 1615665 TCCTCAATGGTGAGGAGCGACACATCGAAGGTACCACCACCCAGATCGAAGATCAGGACG 1615724 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | ||||| || |||||||| ||||| || || || || || || Sbjct 1615725 TTGCGCTCGCCAGAGGCCTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCG 1615784 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| |||||||| || | ||||| || || || || || Sbjct 1615785 TTGATGATACGGAGGACGTTGAGGCCAGCGATGAGACCGGCATCCTTGGTAGCCTGGCGC 1615844 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| |||| | ||| || Sbjct 1615845 TGGGAGTCGTTGAAGTAGGCGGGGACGGTAACGACAGCGTTGTTGACGGTGCCACCAAGG 1615904 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || |||| ||||| || ||||| || || ||||| |||| | Sbjct 1615905 TAGGACTCAGCAGTCTCCCTCATCTTGGTCAGGACCATGGAGGAGATCTCCTCAGGAGTG 1615964 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAGCACCGGG 7875 || ||| || || || || || || | | | || || | | | | | Sbjct 1615965 AAGGTCTTCTCCTCGCCCTTGAACTCGACCTGGACAACAGGCTTGCCACCCTTCTC---- 1616020 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | |||||| | | | | ||||||||| | ||||||| ||| ||||| | Sbjct 1616021 AACAACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCAGCGTCGTTGAACTTGCG 1616080 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| || ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 1616081 GCCGATCAGGCGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTT 1616140 Query 7996 CGCCGCGTCCCCGATAAGACGTTC 8019 || | ||| ||||| ||||| || Sbjct 1616141 TGCGGAGTCACCGATCAGACGCTC 1616164 Score = 123 bits (136), Expect = 3e-23 Identities = 257/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| ||||| | || ||||| || || |||||||||||||| Sbjct 1615102 TCACCAGACAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 1615161 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || || || ||| Sbjct 1615162 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGATCTTGGGG 1615221 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| || | ||| || || | || || || |||||||| | | Sbjct 1615222 ATACGGGTTGAGCCACCAACAAGAACAATCTCGTGGACGGAGGACTTGTCGATCTTGGCG 1615281 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| || || ||| Sbjct 1615282 TCACGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 1615341 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| || || || ||||| |||| || ||||| | || || || Sbjct 1615342 TCGAAGCGAGCACGGGTGATCGAGGTGTAGAAGTCAATACCCTCGTACAGGGAGTCGATC 1615401 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || | || ||||| || ||||| || || || || Sbjct 1615402 TCGATGGAGGTCTGGGCAGAGCTGGAGAGAGTGCGCTTGGCACGCTCGCAAGCAGTGCGG 1615461 Query 7370 AAACGACGAAGGGCACGCGGGTT 7392 | ||| || || ||||| | ||| Sbjct 1615462 AGACGGCGGAGAGCACGGGCGTT 1615484 Score = 96.9 bits (106), Expect = 4e-15 Identities = 229/344 (67%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || | ||| || || | ||| Sbjct 4881310 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCCTGGACCTCGAAAACACCC 4881251 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | || | | | | |||||||| || ||||||||||| || || | | || | Sbjct 4881250 TCGTCGACAGTCAGGATGGAAACATCGAAAGTACCACCACCGAGATCGTAGACGATGATC 4881191 Query 7575 ---CG-TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || | ||| | |||||| ||||| || || ||||| || | ||| ||||| || Sbjct 4881190 TGGCGCTCCGTCTTGTCGTC---CTTCTTGTCCAGGCCGTAGGCCAGAGCGGCCGCGGTG 4881134 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || | | ||| ||| ||| || || ||||| || | || || || || || Sbjct 4881133 GGCTCGTTGACGACACGGAGAACGTTGAGACCGGCAATGGTGCCGGCGTCCTTGGTGGCG 4881074 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || | ||||| |||||||| || ||||| || || |||| || || ||| Sbjct 4881073 GCACGCTGGGCGTCGTTGAAGTAGGCGGGAACCGTAACAACGGCGTTGGTAACGGTCTCG 4881014 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 ||||| || || || | || ||||| ||| | || ||||| Sbjct 4881013 CCGAGGTAGTTCTCGGCAACCTCCTTCATCTTGCTCAGGACCAT 4880970 >seq2 Length=6116231 Score = 136 bits (150), Expect = 5e-27 Identities = 249/357 (70%), Gaps = 7/357 (2%) Strand=Plus/Plus Query 7404 CTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAA 7461 ||||||| || |||| ||||| ||| | ||||| || || ||| | | |||||| Sbjct 1617173 CTTTCTTGGTCTTGCGTTGGAACTCCTTCTTA-AAGTGGTCCAACAAGT-TGGTATCGAA 1617230 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 ||| | |||||| | ||| || || || ||||| || ||||| |||| ||| || | Sbjct 1617231 ATCCTGACCACCAAGGTGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTG 1617290 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 |||| ||||| || ||||| || || || ||||| ||||| | ||||| |||||| | Sbjct 1617291 GATGTGCAACAAGGACACATCGAAAGTTCCTCCACCAAGGTCGTAGATGAGGACGTTCCT 1617350 Query 7582 ATCGTCGTCTTTGTT--CTTATC-GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || | || || | | | ||||||||| ||||| || || || || || || || Sbjct 1617351 CTCCTTCTCGGACTTGCCGGAGCCGAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTT 1617410 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| || |||||||||||| || | | || || || || || || || || Sbjct 1617411 GATGATACGGAGGACGTTCAGGCCAGCGATGGAGCCAGCGTCCTTGGTGGCCTGACGCTG 1617470 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| |||||||||||||| || | ||| || | | || ||||| ||||| Sbjct 1617471 GTTGTCGTTGAAGTAGGCCGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 1617527 >seq1 Length=6723813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| |||| || || || || || || || | | ||| || ||| Sbjct 4374127 CTTCTCGAGACCGTAGGCGAGGGCGGCAGCAGTAGGCTCGTTGACGACACGGAGGACGTT 4374068 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 |||||||| || | || || || || || || || || || ||||| |||||||| Sbjct 4374067 CAGGCCAGAGATCTGACCGGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGC 4374008 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||| || || || |||| | |||| ||| | ||||| || | || ||| | || || Sbjct 4374007 AGGGACGGTAACAACGGCGTTCTTGACGTTCCTGCCGAGGTAGGCCTCAGCGGTCTCCTT 4373948 Query 7777 CATTTTGGTAAGAAC 7791 ||| ||| ||||| Sbjct 4373947 CATCTTGCCGAGAAC 4373933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132569764360