Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq3 188 9e-43
seq2 136 5e-27
seq1 91.5 2e-13
>seq3
Length=5700105
Score = 188 bits (208), Expect = 9e-43
Identities = 381/564 (68%), Gaps = 5/564 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | ||| || || || || || | ||||| || ||||| ||
Sbjct 1615605 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATGCCC 1615664
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | ||| ||||| || |||||||||||||| || || || || |||
Sbjct 1615665 TCCTCAATGGTGAGGAGCGACACATCGAAGGTACCACCACCCAGATCGAAGATCAGGACG 1615724
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | ||||| || |||||||| ||||| || || || || || ||
Sbjct 1615725 TTGCGCTCGCCAGAGGCCTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCG 1615784
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| |||||||| || | ||||| || || || || ||
Sbjct 1615785 TTGATGATACGGAGGACGTTGAGGCCAGCGATGAGACCGGCATCCTTGGTAGCCTGGCGC 1615844
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| |||||||| ||||| || ||||| |||| |||| | ||| ||
Sbjct 1615845 TGGGAGTCGTTGAAGTAGGCGGGGACGGTAACGACAGCGTTGTTGACGGTGCCACCAAGG 1615904
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || || | || |||| ||||| || ||||| || || ||||| |||| |
Sbjct 1615905 TAGGACTCAGCAGTCTCCCTCATCTTGGTCAGGACCATGGAGGAGATCTCCTCAGGAGTG 1615964
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAGCACCGGG 7875
|| ||| || || || || || || | | | || || | | | | |
Sbjct 1615965 AAGGTCTTCTCCTCGCCCTTGAACTCGACCTGGACAACAGGCTTGCCACCCTTCTC---- 1616020
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
| |||||| | | | | ||||||||| | ||||||| ||| ||||| |
Sbjct 1616021 AACAACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCAGCGTCGTTGAACTTGCG 1616080
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
||||| || ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 1616081 GCCGATCAGGCGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTT 1616140
Query 7996 CGCCGCGTCCCCGATAAGACGTTC 8019
|| | ||| ||||| ||||| ||
Sbjct 1616141 TGCGGAGTCACCGATCAGACGCTC 1616164
Score = 123 bits (136), Expect = 3e-23
Identities = 257/383 (67%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||| ||||| ||||| | || ||||| || || ||||||||||||||
Sbjct 1615102 TCACCAGACAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 1615161
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || | || || | ||| | || || || |||
Sbjct 1615162 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGATCTTGGGG 1615221
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || ||||| || | ||| || || | || || || |||||||| | |
Sbjct 1615222 ATACGGGTTGAGCCACCAACAAGAACAATCTCGTGGACGGAGGACTTGTCGATCTTGGCG 1615281
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || ||||| || ||||| ||||| | |||| || || |||
Sbjct 1615282 TCACGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 1615341
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| || || |||||||| || || || ||||| |||| || ||||| | || || ||
Sbjct 1615342 TCGAAGCGAGCACGGGTGATCGAGGTGTAGAAGTCAATACCCTCGTACAGGGAGTCGATC 1615401
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || | || ||||| || ||||| || || || ||
Sbjct 1615402 TCGATGGAGGTCTGGGCAGAGCTGGAGAGAGTGCGCTTGGCACGCTCGCAAGCAGTGCGG 1615461
Query 7370 AAACGACGAAGGGCACGCGGGTT 7392
| ||| || || ||||| | |||
Sbjct 1615462 AGACGGCGGAGAGCACGGGCGTT 1615484
Score = 96.9 bits (106), Expect = 4e-15
Identities = 229/344 (67%), Gaps = 9/344 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || | ||| || || | |||
Sbjct 4881310 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCCTGGACCTCGAAAACACCC 4881251
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574
| || | | | | |||||||| || ||||||||||| || || | | || |
Sbjct 4881250 TCGTCGACAGTCAGGATGGAAACATCGAAAGTACCACCACCGAGATCGTAGACGATGATC 4881191
Query 7575 ---CG-TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
|| | ||| | |||||| ||||| || || ||||| || | ||| ||||| ||
Sbjct 4881190 TGGCGCTCCGTCTTGTCGTC---CTTCTTGTCCAGGCCGTAGGCCAGAGCGGCCGCGGTG 4881134
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
|| || || | | ||| ||| ||| || || ||||| || | || || || || ||
Sbjct 4881133 GGCTCGTTGACGACACGGAGAACGTTGAGACCGGCAATGGTGCCGGCGTCCTTGGTGGCG 4881074
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|| || | ||||| |||||||| || ||||| || || |||| || || |||
Sbjct 4881073 GCACGCTGGGCGTCGTTGAAGTAGGCGGGAACCGTAACAACGGCGTTGGTAACGGTCTCG 4881014
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794
||||| || || || | || ||||| ||| | || |||||
Sbjct 4881013 CCGAGGTAGTTCTCGGCAACCTCCTTCATCTTGCTCAGGACCAT 4880970
>seq2
Length=6116231
Score = 136 bits (150), Expect = 5e-27
Identities = 249/357 (70%), Gaps = 7/357 (2%)
Strand=Plus/Plus
Query 7404 CTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAA 7461
||||||| || |||| ||||| ||| | ||||| || || ||| | | ||||||
Sbjct 1617173 CTTTCTTGGTCTTGCGTTGGAACTCCTTCTTA-AAGTGGTCCAACAAGT-TGGTATCGAA 1617230
Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521
||| | |||||| | ||| || || || ||||| || ||||| |||| ||| || |
Sbjct 1617231 ATCCTGACCACCAAGGTGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTG 1617290
Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581
|||| ||||| || ||||| || || || ||||| ||||| | ||||| |||||| |
Sbjct 1617291 GATGTGCAACAAGGACACATCGAAAGTTCCTCCACCAAGGTCGTAGATGAGGACGTTCCT 1617350
Query 7582 ATCGTCGTCTTTGTT--CTTATC-GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638
|| | || || | | | ||||||||| ||||| || || || || || || ||
Sbjct 1617351 CTCCTTCTCGGACTTGCCGGAGCCGAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTT 1617410
Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698
|| ||||| || |||||||||||| || | | || || || || || || || ||
Sbjct 1617411 GATGATACGGAGGACGTTCAGGCCAGCGATGGAGCCAGCGTCCTTGGTGGCCTGACGCTG 1617470
Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
||||| |||||||||||||| || | ||| || | | || ||||| |||||
Sbjct 1617471 GTTGTCGTTGAAGTAGGCCGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 1617527
>seq1
Length=6723813
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656
||| ||||||||||| |||| || || || || || || || | | ||| || |||
Sbjct 4374127 CTTCTCGAGACCGTAGGCGAGGGCGGCAGCAGTAGGCTCGTTGACGACACGGAGGACGTT 4374068
Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716
|||||||| || | || || || || || || || || || ||||| ||||||||
Sbjct 4374067 CAGGCCAGAGATCTGACCGGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGC 4374008
Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776
||||| || || || |||| | |||| ||| | ||||| || | || ||| | || ||
Sbjct 4374007 AGGGACGGTAACAACGGCGTTCTTGACGTTCCTGCCGAGGTAGGCCTCAGCGGTCTCCTT 4373948
Query 7777 CATTTTGGTAAGAAC 7791
||| ||| |||||
Sbjct 4373947 CATCTTGCCGAGAAC 4373933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132569764360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |