Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 145 9e-30 seq6 105 8e-18 >seq4 Length=4775223 Score = 145 bits (160), Expect = 9e-30 Identities = 439/663 (66%), Gaps = 30/663 (5%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || |||||||| || || || | || || || | ||| ||||| || | | ||| Sbjct 4663614 CTGTTCAACGCCGGAACTCCCAAGCCGCAGCTGGCATCTTGCTTCCTCATCGACATGAAG 4663673 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 ||||| ||| | ||||| |||| ||| |||| || ||| ||||| ||| Sbjct 4663674 GAGGACAGCATCGAGGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCTAAGACC 4663733 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA--AGTCTCGTATTAGAG 111903 ||||| || ||||| | || |||| || | |||| | || | ||| | Sbjct 4663734 GCTGGAGGCATCGGTCTCAACGTCCACCGCATCCGTGCCACCGGCAGCTAC--ATTGCCG 4663791 Query 111904 GTACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 |||| || || | | || ||||| | ||||| ||||| ||||| | ||| ||| || Sbjct 4663792 GTACCAACGGCACCAGCA-ATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTGCA 4663850 Query 111963 CGCTATGTAAACCAAGCTGGGCGT-------CGCAAGGGATCTATCGCAGTCTATCTTGA 112015 ||||| || |||| ||||| ||| ||| | | || |||| ||||| Sbjct 4663851 CGCTACGTTGACCA----GGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGA 4663906 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 ||| |||||||| ||| | | ||||| || | || ||||| || | ||||| Sbjct 4663907 GCCGTGGCACGCCGATGTGTTCAGTTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGA 4663966 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | || || || || |||| ||||||||||||||| || || ||||||||| | || Sbjct 4663967 AGTCCGCGCGCGTGACCTGTTCTACGCTCTCTGGATTCCCGACCTGTTCATGAAGCGTGT 4664026 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATG 112194 ||| ||| |||| |||| | ||| | || || || || || || ||||| | || Sbjct 4664027 CGAGCAGAACGGCACTTGGACCCTCATGTGCCCCAACGAATGC-CCGGGTCTGGCAGA-- 4664083 Query 112195 CCGTG---GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCG 112250 |||| || |||||||| || || |||||| |||||||| | || | || ||| Sbjct 4664084 -CGTGTATGGCGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGCCGTGGCC 4664142 Query 112251 ACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 112309 | | ||| || || | || || | ||||| | ||||||||| || ||||| |||||| Sbjct 4664143 GC-GAGACTGT-CCGGGCGCAGAAGCTGTGGTACGCTATTCTCGAGGCTCAAGTCGAGAC 4664200 Query 112310 TGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-T 112368 ||| | || | ||| | ||||| ||| ||| |||| ||||| || || |||||| | Sbjct 4664201 TGGCAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAATCT 4664260 Query 112369 TGG 112371 ||| Sbjct 4664261 TGG 4664263 >seq6 Length=2952248 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTC 102166 |||||||| || || | ||||| || || |||||| | ||| | || |||| | Sbjct 1057552 ACAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGGATCTGCGACAAGAAC 1057493 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | |||| ||| ||| || | || || || || ||||||||||||||| || Sbjct 1057492 TC-TACCTTCGCTTCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGG 1057434 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || ||| | || | |||||||||||||| ||||||||||| || || |||||| Sbjct 1057433 CTCTTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTC 1057374 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||||| |||||||||||| | ||| || ||||| Sbjct 1057373 GAACGAGCTCATCTCCCGTGACGAGGGAATGCACACCGACTTTGC 1057329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742174980880