Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4 145 9e-30
seq6 105 8e-18
>seq4
Length=4775223
Score = 145 bits (160), Expect = 9e-30
Identities = 439/663 (66%), Gaps = 30/663 (5%)
Strand=Plus/Plus
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| || || || | || || || | ||| ||||| || | | |||
Sbjct 4663614 CTGTTCAACGCCGGAACTCCCAAGCCGCAGCTGGCATCTTGCTTCCTCATCGACATGAAG 4663673
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
||||| ||| | ||||| |||| ||| |||| || ||| ||||| |||
Sbjct 4663674 GAGGACAGCATCGAGGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCTAAGACC 4663733
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA--AGTCTCGTATTAGAG 111903
||||| || ||||| | || |||| || | |||| | || | ||| |
Sbjct 4663734 GCTGGAGGCATCGGTCTCAACGTCCACCGCATCCGTGCCACCGGCAGCTAC--ATTGCCG 4663791
Query 111904 GTACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962
|||| || || | | || ||||| | ||||| ||||| ||||| | ||| ||| ||
Sbjct 4663792 GTACCAACGGCACCAGCA-ATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTGCA 4663850
Query 111963 CGCTATGTAAACCAAGCTGGGCGT-------CGCAAGGGATCTATCGCAGTCTATCTTGA 112015
||||| || |||| ||||| ||| ||| | | || |||| |||||
Sbjct 4663851 CGCTACGTTGACCA----GGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGA 4663906
Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075
||| |||||||| ||| | | ||||| || | || ||||| || | |||||
Sbjct 4663907 GCCGTGGCACGCCGATGTGTTCAGTTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGA 4663966
Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135
| || || || || |||| ||||||||||||||| || || ||||||||| | ||
Sbjct 4663967 AGTCCGCGCGCGTGACCTGTTCTACGCTCTCTGGATTCCCGACCTGTTCATGAAGCGTGT 4664026
Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATG 112194
||| ||| |||| |||| | ||| | || || || || || || ||||| | ||
Sbjct 4664027 CGAGCAGAACGGCACTTGGACCCTCATGTGCCCCAACGAATGC-CCGGGTCTGGCAGA-- 4664083
Query 112195 CCGTG---GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCG 112250
|||| || |||||||| || || |||||| |||||||| | || | || |||
Sbjct 4664084 -CGTGTATGGCGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGCCGTGGCC 4664142
Query 112251 ACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 112309
| | ||| || || | || || | ||||| | ||||||||| || ||||| ||||||
Sbjct 4664143 GC-GAGACTGT-CCGGGCGCAGAAGCTGTGGTACGCTATTCTCGAGGCTCAAGTCGAGAC 4664200
Query 112310 TGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-T 112368
||| | || | ||| | ||||| ||| ||| |||| ||||| || || |||||| |
Sbjct 4664201 TGGCAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAATCT 4664260
Query 112369 TGG 112371
|||
Sbjct 4664261 TGG 4664263
>seq6
Length=2952248
Score = 105 bits (116), Expect = 8e-18
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTC 102166
|||||||| || || | ||||| || || |||||| | ||| | || |||| |
Sbjct 1057552 ACAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGGATCTGCGACAAGAAC 1057493
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
| | |||| ||| ||| || | || || || || ||||||||||||||| ||
Sbjct 1057492 TC-TACCTTCGCTTCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGG 1057434
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
|| ||| | || | |||||||||||||| ||||||||||| || || ||||||
Sbjct 1057433 CTCTTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTC 1057374
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||||||| ||||| |||||||||||| | ||| || |||||
Sbjct 1057373 GAACGAGCTCATCTCCCGTGACGAGGGAATGCACACCGACTTTGC 1057329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742174980880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |