Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 109 6e-19 seq6 96.9 4e-15 >seq4 Length=4775223 Score = 109 bits (120), Expect = 6e-19 Identities = 302/456 (66%), Gaps = 8/456 (2%) Strand=Plus/Minus Query 110375 CCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| |||||||| || ||| |||||| ||||| || | |||| | ||| | Sbjct 4664263 CCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTG 4664204 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGC 110492 ||||| || || | || |||||| || | ||| | | || ||| | || ||||| | Sbjct 4664203 CCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-ACAGTCTC 4664145 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 | | | || |||| |||||||| ||| | |||| || |||| || ||||| Sbjct 4664144 GCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACAC 4664085 Query 110553 ATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 || | |||||| || || || ||| || | ||||| |||| | || || ||| | Sbjct 4664084 GTCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGA 4664026 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | | ||||||||||||||| |||||||| | || |||| |||||||| || | | Sbjct 4664025 CACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTT 4663966 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 | || | || ||||| ||| || || | || | | ||| | |||||| || | Sbjct 4663965 CCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCT 4663906 Query 110732 CGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTG 110788 | || |||| || | || ||| || ||| |||||| ||| |||||||| | Sbjct 4663905 CAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAG 4663846 Query 110789 TGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824 || ||| |||| | |||||| ||||| | |||| Sbjct 4663845 TGTTGTTGTAGACGCGGAGCATGGGAATCAGACCAT 4663810 >seq6 Length=2952248 Score = 96.9 bits (106), Expect = 4e-15 Identities = 339/517 (66%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| |||||||| || ||||| || | ||| |||||||| ||||| Sbjct 1057041 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATG 1057100 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || | | ||| || | | | |||| |||| ||| || || Sbjct 1057101 AAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTG-CCAAGAGCCACCAGCAGGCG 1057159 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| ||| ||||||| || | | |||| | | ||||| || | || | Sbjct 1057160 GTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCG-A 1057218 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || ||||| || ||| | ||||||||| |||||||| || | | || | Sbjct 1057219 CGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCT 1057278 Query 119446 GAATAGTTTCTGTCGATGG--TTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTC 119503 | | || | | ||| || | | | | | | |||| | |||||| || Sbjct 1057279 CGACGGCCTCAGG-GCTGGGCTTCGACT-TGATGTGCGAGAACAGCAGGCAGGCAAAGTC 1057336 Query 119504 TTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAG 119563 || | || || || || ||||||||||| || |||| ||| || |||||||| Sbjct 1057337 GGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAG 1057396 Query 119564 TCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 || | ||||| ||||| ||||||| ||| || |||||||| ||||| || Sbjct 1057397 ACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGAC 1057456 Query 119624 ACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGA 119679 |||||| || | |||||| ||| ||||| ||| |||||| || ||| || Sbjct 1057457 GGCGGCGAAGGCAATCAGACGCGAAGC-GAAGGTAGAGTTCTTGTCGCAGATCCAGCGGA 1057515 Query 119680 GAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 ||||||||| |||||| || |||||||| || || Sbjct 1057516 GAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTGT 1057552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975786496200