Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 6e-19
seq6 96.9 4e-15
>seq4
Length=4775223
Score = 109 bits (120), Expect = 6e-19
Identities = 302/456 (66%), Gaps = 8/456 (2%)
Strand=Plus/Minus
Query 110375 CCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433
||||| |||||||| || ||| |||||| ||||| || | |||| | ||| |
Sbjct 4664263 CCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTG 4664204
Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGC 110492
||||| || || | || |||||| || | ||| | | || ||| | || ||||| |
Sbjct 4664203 CCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-ACAGTCTC 4664145
Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552
| | | || |||| |||||||| ||| | |||| || |||| || |||||
Sbjct 4664144 GCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACAC 4664085
Query 110553 ATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611
|| | |||||| || || || ||| || | ||||| |||| | || || ||| |
Sbjct 4664084 GTCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGA 4664026
Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671
| | ||||||||||||||| |||||||| | || |||| |||||||| || | |
Sbjct 4664025 CACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTT 4663966
Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731
| || | || ||||| ||| || || | || | | ||| | |||||| || |
Sbjct 4663965 CCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCT 4663906
Query 110732 CGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTG 110788
| || |||| || | || ||| || ||| |||||| ||| |||||||| |
Sbjct 4663905 CAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAG 4663846
Query 110789 TGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824
|| ||| |||| | |||||| ||||| | ||||
Sbjct 4663845 TGTTGTTGTAGACGCGGAGCATGGGAATCAGACCAT 4663810
>seq6
Length=2952248
Score = 96.9 bits (106), Expect = 4e-15
Identities = 339/517 (66%), Gaps = 13/517 (3%)
Strand=Plus/Plus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|||||||| || | ||| |||||||| || ||||| || | ||| |||||||| |||||
Sbjct 1057041 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATG 1057100
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGACG 119326
||||| || || || | | ||| || | | | |||| |||| ||| || ||
Sbjct 1057101 AAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTG-CCAAGAGCCACCAGCAGGCG 1057159
Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386
|||| ||| ||||||| || | | |||| | | ||||| || | || |
Sbjct 1057160 GTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCG-A 1057218
Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445
|||| || ||||| || ||| | ||||||||| |||||||| || | | || |
Sbjct 1057219 CGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCT 1057278
Query 119446 GAATAGTTTCTGTCGATGG--TTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTC 119503
| | || | | ||| || | | | | | | |||| | |||||| ||
Sbjct 1057279 CGACGGCCTCAGG-GCTGGGCTTCGACT-TGATGTGCGAGAACAGCAGGCAGGCAAAGTC 1057336
Query 119504 TTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAG 119563
|| | || || || || ||||||||||| || |||| ||| || ||||||||
Sbjct 1057337 GGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAG 1057396
Query 119564 TCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623
|| | ||||| ||||| ||||||| ||| || |||||||| ||||| ||
Sbjct 1057397 ACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGAC 1057456
Query 119624 ACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGA 119679
|||||| || | |||||| ||| ||||| ||| |||||| || ||| ||
Sbjct 1057457 GGCGGCGAAGGCAATCAGACGCGAAGC-GAAGGTAGAGTTCTTGTCGCAGATCCAGCGGA 1057515
Query 119680 GAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716
||||||||| |||||| || |||||||| || ||
Sbjct 1057516 GAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTGT 1057552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975786496200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |