Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq6 84.2 3e-11 >seq4 Length=4775223 Score = 107 bits (118), Expect = 2e-18 Identities = 304/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| || | || ||||| ||||| || || ||||| | |||||||| | Sbjct 4664356 GGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACG 4664297 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || | ||| || || ||| || || | |||||| ||||| ||||| | Sbjct 4664296 ATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGG 4664237 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| |||||||| | |||| |||| | || ||||| || | || |||||| Sbjct 4664236 TTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATA 4664177 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || | ||||| | || ||| | || ||| | || | | || |||||| |||||||| Sbjct 4664176 GCGTACCACAGCTTCTGCGCCCGG-ACAGTCTCGCGGCCACGGCCCTCCTTCTCGTACTG 4664118 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTG 106754 |||||| || || |||||||| || | |||| | ||||| || || || || | Sbjct 4664117 CTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGG-GCATTCGTTGG 4664059 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | || | ||| || || ||| || ||||||||||| ||||| ||||||| Sbjct 4664058 GGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCC 4663999 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 | || | | || || || | || | || || | || ||||| || | | Sbjct 4663998 AGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGT 4663939 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916 | ||||| | | ||| |||||||| |||||||| |||| Sbjct 4663938 CGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGA 4663897 >seq6 Length=2952248 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| | ||||| || ||||| || || || || |||||| ||||| Sbjct 1057328 GGCAAAGTCGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCC 1057387 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | ||| || ||| ||||||||| Sbjct 1057388 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGAT 1057447 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 |||||| || || || |||| || ||| ||||||| Sbjct 1057448 ACCCTCGACGGCGGCGAAGGCAATCAGACGCGAAGCGAAGG 1057488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980586131960