Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 2e-18
seq6 84.2 3e-11
>seq4
Length=4775223
Score = 107 bits (118), Expect = 2e-18
Identities = 304/462 (66%), Gaps = 4/462 (1%)
Strand=Plus/Minus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
||||| || | || ||||| ||||| || || ||||| | |||||||| |
Sbjct 4664356 GGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACG 4664297
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || || | ||| || || ||| || || | |||||| ||||| ||||| |
Sbjct 4664296 ATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGG 4664237
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||||| |||||||| | |||| |||| | || ||||| || | || ||||||
Sbjct 4664236 TTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATA 4664177
Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695
|| | ||||| | || ||| | || ||| | || | | || |||||| ||||||||
Sbjct 4664176 GCGTACCACAGCTTCTGCGCCCGG-ACAGTCTCGCGGCCACGGCCCTCCTTCTCGTACTG 4664118
Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTG 106754
|||||| || || |||||||| || | |||| | ||||| || || || || |
Sbjct 4664117 CTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGG-GCATTCGTTGG 4664059
Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814
| || | || | ||| || || ||| || ||||||||||| ||||| |||||||
Sbjct 4664058 GGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCC 4663999
Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874
| || | | || || || | || | || || | || ||||| || | |
Sbjct 4663998 AGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGT 4663939
Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916
| ||||| | | ||| |||||||| |||||||| ||||
Sbjct 4663938 CGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGA 4663897
>seq6
Length=2952248
Score = 84.2 bits (92), Expect = 3e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| | ||||| || ||||| || || || || |||||| |||||
Sbjct 1057328 GGCAAAGTCGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCC 1057387
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||||||||| |||||||| | ||| | || | ||| || ||| |||||||||
Sbjct 1057388 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGAT 1057447
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433
|||||| || || || |||| || ||| |||||||
Sbjct 1057448 ACCCTCGACGGCGGCGAAGGCAATCAGACGCGAAGCGAAGG 1057488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980586131960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |