Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 >seq4 Length=4775223 Score = 111 bits (122), Expect = 1e-19 Identities = 270/404 (67%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 29985 GCTCACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30041 ||||||||| || || | ||||| ||||| || || || ||||| || ||| Sbjct 1682197 GCTCACGTAGAATTGTGCAAACATG---TGGCAAGGGGGCAGGGCCATCTTCTTCAGGTC 1682253 Query 30042 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30101 | || ||||| |||| || ||||||||| | ||| | || |||||| | | ||| Sbjct 1682254 TGCCGGATTCCATGCGCTCATGATGATGCGGCGGTCATACGGCTTGTTCTTCAGCTTGTC 1682313 Query 30102 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161 | | | | || ||| || || || |||| ||||||| | || ||| || Sbjct 1682314 GATGACATCGGCCAACTGGTCAACACCTTGGCCCGTATAGTCTGTCTTCGCATCCACATA 1682373 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 |||||||||||| || | ||||||||| || || ||||| |||||||| |||||||| | Sbjct 1682374 CTCTGCTCCGAAGTGTCGCCACTGGAAGCCATATACCGGGCCCAGGTCGCCCTCTTCGCG 1682433 Query 30222 GTGCTCGA-AGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 ||| || || ||| | |||| | || || | || ||||| |||||||||||||| Sbjct 1682434 GTG--AGACAGTCCCACGCTGTCAAGGAACTCGCGCGATCCGTTTCCGTCCCAGATCTTT 1682491 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 | || ||| || | ||| || |||| || ||||||||| || || || Sbjct 1682492 ATGCCAGCCTCTGACAATGGTTTAGATGAGGTGGTGCCAGCGACGAACCAGAGAAGTTCA 1682551 Query 30340 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | | || || | ||| || | ||| || ||||| ||||| Sbjct 1682552 GCAATAACTGCACGCAGAAATACGCGCTTCGTAGTGAGAAGGGG 1682595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| ||||| |||||||| || ||||| || ||||||||||| ||||| Sbjct 1681934 GGCTCTCGCTCCAGCTGCACCTTCAGCGCATCGACGTGGTCGAGGTAGACGTGCGCGTCA 1681993 Query 29839 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897 |||| ||| || | || || | || || || | |||||| || | ||||| ||| Sbjct 1681994 CCCATGGTATGCGTCAGCGTCCCGGGGGTC-AGGTCACAGACGTGCGCTAGCATGTGCGT 1682052 Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957 ||| |||| || || ||||| || || || ||||| |||||||| | |||| ||| Sbjct 1682053 GAGAAGAGCATACGACGCAATGTTGAAAGGGACGCCGAGACCCATGTCGCAAGACCGCTG 1682112 Query 29958 GTAGAGC 29964 || ||| Sbjct 1682113 ATAAAGC 1682119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617455579217