Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq8 125 1e-23 >seq8 Length=2003875 Score = 125 bits (138), Expect = 1e-23 Identities = 421/643 (65%), Gaps = 13/643 (2%) Strand=Plus/Minus Query 197038 AAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTT-GTCGGGATTGTAACAGGC 197096 || || ||||| || || || | || ||||||| | | ||| | || | ||||| || || Sbjct 1257995 AATCCAGTACCTATGTTGCAGACGGTTTCGTACGTATCGTTAGACGAG-TTGTAGCACGC 1257937 Query 197097 GAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAAC 197156 || | ||| ||||||||| || | ||| ||| |||| | | |||| | || Sbjct 1257936 AAGCAGGAAGGCGCCGTAGACAGAAGTGCGCTTGCCCTTGCCGTAGTAAGCTCCAAGCAC 1257877 Query 197157 CACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCT 197216 ||||||||| ||| |||||| ||| ||| | ||| |||||||| | |||||||||| | Sbjct 1257876 CACCAGATCAAGACTGTCGCCCACGCCTGAGAGGTAGTCTTTCTTGACTTTGAGCCAG-T 1257818 Query 197217 TCT-AGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCC----AGGGTCTTGATCATC 197271 ||| ||| | ||| | |||||| | | | | | |||| || |||| | |||| Sbjct 1257817 TCTGAGAGCGCTTCGAGGGCTCGTA-GCTACTCTCAGGTCCATCGAGCATCTTAACCATC 1257759 Query 197272 AATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGAATGTCTTCCGGTTTG 197331 | || |||||| ||||||||| ||||| | || | || || || || | | Sbjct 1257758 AGCCCTTCGCAAGACGCCTTCACGGACTTGTCAAGGAGATCCTGGATCTCGTCGAGCTCA 1257699 Query 197332 TTAG-ACATCATATCTCGCGCGAAGATAAATTGTCCCTCCACCTCCGTAAAACAACTCCT 197390 || | | | || | ||||| |||| | ||||| || | ||| | | | Sbjct 1257698 TTGGTGTCGCCGAACT-GAGCGAATGTAAACTCGCCCTCGACAGGAG-CGAACGATGCGT 1257641 Query 197391 -CATAAGTTCCCTCCTCTCTCTGAAGCTCTTGTTGACCTGAGACACTCCGTTCATGTACA 197449 || || || | | ||| | ||| ||| ||||| | | ||||||| | ||| | Sbjct 1257640 GCAGGAGGTCACGACGCTCACGGAAAGGCTTATTGACGAGGGCTTCTCCGTTGAGGTAGA 1257581 Query 197450 ACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTGACATCTTTAC 197509 | ||| || || ||||| || |||| ||| | | || || ||||||| || || | Sbjct 1257580 GGAGGTCGAATGCGAAGACACAGACCTTGACCTTGACGTCCTCGACCTTGACGTCCTTCC 1257521 Query 197510 GTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAA 197569 |||| ||| |||| |||| || || |||| || ||||| || || ||||| |||| Sbjct 1257520 TCTTTCGCGTCATCAGCGTTTGGAACGGCAGGACCTTCTTCTCATCGACATCCCACGCAA 1257461 Query 197570 CTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGTTGATCGATTGGGGAAGCCTAT 197629 | | |||| ||| | || || |||| ||||| |||| | || || ||| | | Sbjct 1257460 CAGTCTCACAGTCAAGGACAAAGCTCTTCGTCCCCTCCTTGACCCATGACGGTAGCTTCT 1257401 Query 197630 TGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCG 197672 || ||||| || ||||||| || | ||| |||||||| Sbjct 1257400 CGAGGATGTCCGGATACTTCTTGGAAAGGTCTTCCGAGTTGCG 1257358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676729354685520