Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 262 7e-65 seq4 248 2e-60 seq10 105 1e-17 >seq6 Length=2952248 Score = 262 bits (290), Expect = 7e-65 Identities = 372/517 (72%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 1057037 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTC 1057096 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||||| | ||| || | | ||| ||| | ||||| Sbjct 1057097 CATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTT--GCCAAGAGCCACCAGC 1057154 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||||| || ||||||||| | ||| Sbjct 1057155 AGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGG 1057214 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||||| || | ||||| ||||||||||| || | ||| || || | |||| Sbjct 1057215 GCGACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATC 1057274 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT--AGAGCATGCAGG 48134 | || ||| | ||| | || | | | || | || | || | |||| ||||| Sbjct 1057275 TTCTCGACG---GCCTCAG-GGCTGGGCTTCG-ACTTGATGTGCGAGAACAGCAGGCAGG 1057329 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| |||||| || ||||| ||| ||||||| |||| |||||| || || | Sbjct 1057330 CAAAGTCGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGG 1057389 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || | ||||||||||| ||||||||| | Sbjct 1057390 GCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATAC 1057449 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || | || | | |||| | || ||||||||| |||||| Sbjct 1057450 CCTCGACGGCGGCGAAGGCAATCAGACGCGAAGCGAAGGTAGAGTTCTTGTCGCAGATCC 1057509 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || || |||||||| ||||||||||||||||| || Sbjct 1057510 AGCGGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGG 1057546 >seq4 Length=4775223 Score = 248 bits (274), Expect = 2e-60 Identities = 1057/1640 (64%), Gaps = 84/1640 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || |||||||| | || |||| ||||||| ||| || || ||||||||||||||||| Sbjct 4665259 ACAGTAAACTGAATGGGCGCAGCGGCAGCCTGGGTACGGAGGTAGTACATGCCGGTCTTG 4665200 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 ||||| ||| ||| || | |||||| | || | || || | || | | Sbjct 4665199 AGGCCGAGCTT---CCATCCAGCGAAGTGCATAGAGGTAATCTTGCCCATCGTAGGGTCC 4665143 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 | |||| |||| | ||| |||||||| |||||| ||||| | | Sbjct 4665142 T--TCAT----GTGG---------ATGTTGAGGGACTGCGACTGGTCAATGAAGGCACCA 4665098 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||| || ||||| | | ||| | ||| || || ||||| || |||||| ||| Sbjct 4665097 CGGTCGGCAGCCATCTGGACGATGGTGCGCTGAGAAAGTTCCCAGACAGTCTTGTAGAGC 4665038 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCT----GTGTATGGT 212845 | |||| ||| || || | | ||| |||| ||| | || || || | | ||| | Sbjct 4665037 GCCTTGATGTCGTCGGGAATGTTGGGAATGTGCTGAATGGAACCGCTAGAAGCG-ATGAT 4664979 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGT 212904 | | | ||| | || ||| || ||| |||| ||| | ||| | || Sbjct 4664978 GCGGTTCTT---CATCTGGTCAGACCATAG-CCCGAGGTCGACCAAGTCCTTCAGGAGCC 4664923 Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964 |||||||| | |||||| ||||| | || || | | ||| | ||| || |||| Sbjct 4664922 AGGGGTTGACAACCTGGAATTCACCGGCCAGGACGCGGCGAGAGTAGATGTTCGATGTGT 4664863 Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024 | ||||||| || ||||||| || |||||||| || ||| || |||||||| | Sbjct 4664862 AAGGCTCGAAGCACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTG 4664803 Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGA-GGCGCCGAAGCTCTGCCCAG 213083 | || || ||| ||| | | ||||||| | || ||| | ||| | ||||| Sbjct 4664802 CGACGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTAT-CCCAG 4664744 Query 213084 TCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||||| ||| ||| ||| | |||||||||||| |||| | ||| || Sbjct 4664743 TCCCAG-----AGATCGGTGGGAGTCTT----GTTCCACATGTCGTACTGGAGGATACCC 4664693 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 | | ||||| |||||| | | || || || || |||||| |||||| Sbjct 4664692 TGAGAGGCAGGGCTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATC 4664633 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 || || |||||||| | ||| ||||| || || |||| ||||||||| ||||||| Sbjct 4664632 GAGGCAGTGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCC 4664573 Query 213264 TCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 || ||||| ||| ||||| | |||| ||||||| || || | ||| || Sbjct 4664572 TCGGGGGAGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCC 4664513 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGG-AGCACTCCTCCAAGGGGTAAAAGTT 213382 | | ||||| | ||| | || ||| ||| ||| ||| || ||||| ||| Sbjct 4664512 ACCGCAATGGGGCGGTGACGCATGTTGCTCTTTCTAGC-CTCAGGCACCGGGTAGTGGTT 4664454 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | ||||||||||||||| | ||| ||| | ||||| | | || | Sbjct 4664453 GATGTCGATGATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCT---- 4664398 Query 213443 GTGATTGAACACGTAGCCCCCGTCCTG------CACAAACTCAGGCAGGGCGATGCTGGC 213496 || ||||| |||| |||| || ||| || || || || | | || Sbjct 4664397 -TG-TTGAAGTCGTAAATACCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGC 4664340 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 || |||||| ||||| || || | | | | |||||||| | ||||||| ||| ||||| Sbjct 4664339 CAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTT 4664280 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGT 213615 || || |||||||| || |||| ||||| ||| ||| | |||| ||||||| Sbjct 4664279 AGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGT 4664221 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 | | |||| ||||| || ||||| | || | | | || || | ||| || | | Sbjct 4664220 ACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCT 4664161 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734 ||| ||| | || | || ||| | | ||||||||| |||||||| | Sbjct 4664160 GCGCCCGGACA----GTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCC 4664105 Query 213735 TTGAATTCGTGGCCCCAGACC-CTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| || | ||| | || ||| |||| ||||| || ||| ||||||||| | Sbjct 4664104 TCGAACTCCTCGCCATACACGTCTG-CCAGACCCGGGCATTCGTTGGGGCACATGAGGGT 4664046 Query 213794 CCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||| || || || ||| ||| | || |||||||||||| || | ||| || ||| || Sbjct 4664045 CCAAGTGCCGTTCTGCTC-GACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGA 4663987 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 ||||||| | | | || ||| ||| ||| ||||| || || || || | Sbjct 4663986 ACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGA 4663927 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGC 213969 | | || |||||||||||||| | ||||||||||||||||||||| | |||| |||| Sbjct 4663926 ACACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGC 4663867 Query 213970 CCTGGTCCAC-CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG 214028 ||||||| || ||| | || ||||| ||| ||| || | ||| | ||| || ||| Sbjct 4663866 CCTGGTCAACGTAGCGT-GCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTG 4663808 Query 214029 GACTG--TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA-- 214084 ||| |||||||| || || || || ||||| ||| | || ||| |||| Sbjct 4663807 --CTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCAC---GGATGC-GGTGGACG 4663754 Query 214085 --GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 ||| || ||||| || ||| ||| ||||||||||||||| | | | || || | Sbjct 4663753 TTGAGACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAG 4663694 Query 214143 ATGCCGGCCATGCTGTCATC 214162 ||||| | |||||||| || Sbjct 4663693 ATGCCCTCGATGCTGTCCTC 4663674 >seq10 Length=1499934 Score = 105 bits (116), Expect = 1e-17 Identities = 337/509 (66%), Gaps = 28/509 (6%) Strand=Plus/Minus Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATG 213623 |||| | ||| |||| ||| ||||| |||| |||| | |||||||| |||| | Sbjct 1070889 CGGACCGGGCCGAGGTGCTGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACG 1070830 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCT 213681 || || || || ||||||| | | | || ||| |||| || | || |||| Sbjct 1070829 CTCGGCCCGCCCGTGTCCAGCTGGGCCTCGACGAT--GGCCGTCCACAGCTCCCGCGCCT 1070772 Query 213682 TGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAAT 213740 ||||| || | | | ||| | || ||||||| | ||||||||| || ||| Sbjct 1070771 TGACCGTGCGGCGGCCGCATCCC----TCGCTCTCGTACCGCTCGTAGAGCGCGCCGAAC 1070716 Query 213741 TCGTGGCCCCAGACCCT--GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 ||| |||||| | | | | || || || || || || ||||| || |||||| Sbjct 1070715 TCG--GCCCCATAGCAATCGACGAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGT 1070658 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 | | || | ||| | | |||||||||||||||| |||||||||||| | ||| | Sbjct 1070657 CGCGATCCGCGTCGACGCGCCGCATGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGAT 1070598 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 ||| | || | ||| ||| || || | || ||| | || ||||| |||| || Sbjct 1070597 CCCGCGCCCGCAGCTCCTCCTTGCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGT 1070538 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCGCCCTGGTCCA 213978 | |||||||||||||||| ||||| || | || || |||| | ||| || Sbjct 1070537 CGGCGTGCCACGGCTCCAGGTAGACAGCGAGATTGC---TACTGTTGCTG--CTGCTC-- 1070485 Query 213979 CCAGCCTGGC-CACCAT---GTTGAAGATGCGCAGGACGGGTACCA-GCCCGTTGGACTG 214033 ||||| ||| | || | |||||||| |||||| | ||| || | |||| ||| | | Sbjct 1070484 CCAGCGAGGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGACGCCCTTTG--CCG 1070427 Query 214034 T-CCGTTGGTTCCCGCTATATACGAGCCG 214061 | |||| ||| || || || | ||||||| Sbjct 1070426 TCCCGTCGGTGCCGGCGATGTGCGAGCCG 1070398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532462319360