Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 181 2e-40 seq4 147 4e-30 >seq6 Length=2952248 Score = 181 bits (200), Expect = 2e-40 Identities = 346/515 (67%), Gaps = 9/515 (2%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||||||| |||||| ||||| | |||||| | | ||| | |||| Sbjct 1057546 CCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGGATCTGCGACAAGAACTCTACC 1057487 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | ||| ||| | ||||| || || || ||||| ||||| |||||||| || || Sbjct 1057486 TTCGCTTCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTC 1057427 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || ||||||||| || ||| || |||||| Sbjct 1057426 GCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAG 1057367 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | | |||||||| | |||| || |||||||||||||| | | || ||| Sbjct 1057366 CTCATCTCCCGTGACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCG---CAC 1057310 Query 26050 TTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 | || || | ||| ||||| | | || || | ||||||||||| ||| Sbjct 1057309 ATCAAGTCGAAGCCCAGCCCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATC 1057250 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 ||||||||||| | ||||||||||| || ||| Sbjct 1057249 GAGAAGGAGTTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTC 1057190 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAG 26228 ||| |||| ||||| |||| || ||||||| ||||| ||| | ||| | | || Sbjct 1057189 ATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTTGGCA---ACAAG 1057133 Query 26229 A--CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 | ||||| || | ||||| |||||||| ||||| ||||| ||| | | || ||| Sbjct 1057132 AAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAG 1057073 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||| || ||| | || || ||||| || Sbjct 1057072 ACCAACTTCTTCGAGAAGCGCGTTGGTGACTACCA 1057038 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| || || |||||||| || Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAA 25592 |||||||| | ||| |||| || || ||| | | || |||| || | ||| || Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGC-GCTTCTTCATCTC 1057817 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | |||| | || ||||| || || || ||||| || ||||||||||| ||| |||| | Sbjct 1057816 GCACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCG 1057757 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| |||||| || |||||||| |||||||| Sbjct 1057756 CTTCAGCTCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 1057703 >seq4 Length=4775223 Score = 147 bits (162), Expect = 4e-30 Identities = 675/1046 (65%), Gaps = 51/1046 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || |||||||| ||||| |||||||| |||||| ||||||| |||||||||||| Sbjct 4664626 GTGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGG 4664567 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| ||||| || || | | ||| | || || || || | || || | | Sbjct 4664566 GAGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCA 4664507 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 ||||| | ||| | | ||||| || || ||||| || || ||||| |||| Sbjct 4664506 ATGGGGCGGTGACGCATGTTGCTCTTTCTAGCCTCAGGCACCGGGTAGTGGTTGATGTCG 4664447 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| | |||| | || || ||||| || | || ||| | ||| Sbjct 4664446 ATGATCTTGTTCAAGTTCT------TCAC---AAGCACCTGAGTGACCTCGTGGAGCTTG 4664396 Query 221657 AACACCAACTCGCCG---CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | ||| |||| | || | ||||| || | || || | | Sbjct 4664395 TTGA---AGTCGTAAATACCGTTCTCGACG---TCCACGAAGGTCGGAAGAGCCAGGGAA 4664342 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||| || ||||| || || || | || |||| | |||||| || ||| Sbjct 4664341 GCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGG 4664282 Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 || ||||| ||||| || || | || || || |||||| ||| ||| | || Sbjct 4664281 TTAGAGCTGCGA---ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTC 4664226 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| | ||| ||||| ||||||||| | |||||| | ||||| || ||| || Sbjct 4664225 CTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAG 4664166 Query 221890 TTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGTAT 221945 | |||| || | || ||| || | | | ||||| ||| || ||| | ||| Sbjct 4664165 CT-TCTGCGCCCGGACAGTC-TCGCGGCCACGGCCCTC---CTTCTCGTACTGCTCGTAG 4664111 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | | |||| || || ||| | || |||| || || || | ||| |||| Sbjct 4664110 AGAGCCT--CGAACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTGGGGCACA 4664053 Query 222006 TCAGACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 | || |||| |||| ||| | | ||| | || |||||| ||||| || ||||| || Sbjct 4664052 TGAGGGTCCAAGTGCC-GTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGA 4663994 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA- 222123 || | || || || | | || |||||| |||| ||| || | || || | Sbjct 4663993 GCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGG 4663934 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 ||||| || | || |||||||||||||| || |||| ||| | ||||| || ||||| Sbjct 4663933 AAACTGAACACA-TCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTT 4663875 Query 222184 GTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCA 222242 ||| || ||||| | || | | | ||| | |||| ||| ||| || | || | || Sbjct 4663874 GTTACCGCCCTGGT-CAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCA 4663816 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGG 222302 | || ||| |||||||| || |||||| ||| ||| | || | | || Sbjct 4663815 GACCATTGCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCAC---GGATGC-GG 4663760 Query 222303 CAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| | ||||| || || ||| || ||||||||||||||| ||||||| ||| Sbjct 4663759 TGGACGTTGAGACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTG 4663700 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| || ||||||||| | || | || || ||||| | || ||| Sbjct 4663699 TCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGC 4663640 Query 222419 GATTTGGTGGAACAGGCGTTAAACAG 222444 | |||| | | |||||| ||||| Sbjct 4663639 GGCTTGGGAGTTCCGGCGTTGAACAG 4663614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844463293760