Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 4e-15 seq6 84.2 3e-11 >seq4 Length=4775223 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/364 (67%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 75704 CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTC 75763 || |||||||| ||||| ||||||||||| || ||| || || ||| | || | Sbjct 4663995 CTCTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGCAGAACGGCACTTGGACCCTCATG 4664054 Query 75764 TGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTA 75822 || || || || || || ||||| | |||| | || |||||||| || || ||||| Sbjct 4664055 TGCCCCAACGAATGC-CCGGGTCTGGCAGACGTGTATGGCGAGGAGTTCGAGGCTCTCTA 4664113 Query 75823 CACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGA 75881 | |||| || ||||||| | | | | |||||| || | ||| || | | ||| Sbjct 4664114 CGAGCAGTACGAGAAGGAGGGCCGTGGCCGCGAGACTGT-CCGGGCGCAGAAGCTGTGGT 4664172 Query 75882 AGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTT 75941 | ||||||||| | | || |||||||| | || | ||| | |||||||| | Sbjct 4664173 ACGCTATTCTCGAGGCTCAAGTCGAGACTGGCAACCCCTTCATGTTGTACAAGGACCACT 4664232 Query 75942 GTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGG 76001 | ||| ||||| ||||| |||||| | || || || ||||| || |||||| | Sbjct 4664233 GCAACCGCAAGAGCAACCAGAAGAATCTTGGCACCATTCGCAGCTCTAACCTTTGCTGCG 4664292 Query 76002 AAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCC 76061 | || | |||||||| | ||||| || || ||||| ||||| || | || | Sbjct 4664293 AGATCGTCGAGTACACTGCCCCCGATGAAGTCGCCGTCTGCAACTTGGCTTCCCTGGCTC 4664352 Query 76062 TTCC 76065 |||| Sbjct 4664353 TTCC 4664356 >seq6 Length=2952248 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||||| ||| || |||| || || || ||||||||||||||| ||| || | Sbjct 1057488 CCTTCGCTTCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTT 1057429 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | || | ||| | |||||||| ||||||||||| ||||| |||||| || | Sbjct 1057428 TCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACG 1057369 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | || || ||||| || ||||| | ||| || |||||| Sbjct 1057368 AGCTCATCTCCCGTGACGAGGGAATGCACACCGACTTTGCC 1057328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569383743520