Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq4 96.9 4e-15
seq6 84.2 3e-11
>seq4
Length=4775223
Score = 96.9 bits (106), Expect = 4e-15
Identities = 243/364 (67%), Gaps = 4/364 (1%)
Strand=Plus/Plus
Query 75704 CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTC 75763
|| |||||||| ||||| ||||||||||| || ||| || || ||| | || |
Sbjct 4663995 CTCTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGCAGAACGGCACTTGGACCCTCATG 4664054
Query 75764 TGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTA 75822
|| || || || || || ||||| | |||| | || |||||||| || || |||||
Sbjct 4664055 TGCCCCAACGAATGC-CCGGGTCTGGCAGACGTGTATGGCGAGGAGTTCGAGGCTCTCTA 4664113
Query 75823 CACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGA 75881
| |||| || ||||||| | | | | |||||| || | ||| || | | |||
Sbjct 4664114 CGAGCAGTACGAGAAGGAGGGCCGTGGCCGCGAGACTGT-CCGGGCGCAGAAGCTGTGGT 4664172
Query 75882 AGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTT 75941
| ||||||||| | | || |||||||| | || | ||| | |||||||| |
Sbjct 4664173 ACGCTATTCTCGAGGCTCAAGTCGAGACTGGCAACCCCTTCATGTTGTACAAGGACCACT 4664232
Query 75942 GTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGG 76001
| ||| ||||| ||||| |||||| | || || || ||||| || |||||| |
Sbjct 4664233 GCAACCGCAAGAGCAACCAGAAGAATCTTGGCACCATTCGCAGCTCTAACCTTTGCTGCG 4664292
Query 76002 AAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCC 76061
| || | |||||||| | ||||| || || ||||| ||||| || | || |
Sbjct 4664293 AGATCGTCGAGTACACTGCCCCCGATGAAGTCGCCGTCTGCAACTTGGCTTCCCTGGCTC 4664352
Query 76062 TTCC 76065
||||
Sbjct 4664353 TTCC 4664356
>seq6
Length=2952248
Score = 84.2 bits (92), Expect = 3e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128
||||||| ||| || |||| || || || ||||||||||||||| ||| || |
Sbjct 1057488 CCTTCGCTTCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTT 1057429
Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188
|| | || | ||| | |||||||| ||||||||||| ||||| |||||| || |
Sbjct 1057428 TCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACG 1057369
Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
| || || ||||| || ||||| | ||| || ||||||
Sbjct 1057368 AGCTCATCTCCCGTGACGAGGGAATGCACACCGACTTTGCC 1057328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569383743520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |