Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3 266 4e-66 >seq3 Length=5700105 Score = 266 bits (294), Expect = 4e-66 Identities = 554/823 (67%), Gaps = 9/823 (1%) Strand=Plus/Minus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| || || || | ||||| || || |||||||| || |||||||| | || Sbjct 1615475 GCTCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACTCTCTCCAGCTCTGCC 1615416 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || | ||||| || || ||| || || ||||||||||| || | || ||| Sbjct 1615415 CAGACCTCCATCGAGATCGACTCCCTGTACGAGGGTATTGACTTCTACACCTCGATCACC 1615356 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| || || || ||| | | || | || | ||||| || || || Sbjct 1615355 CGTGCTCGCTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAG 1615296 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || || |||||||| ||||| || ||||| || | || ||||| ||||| || Sbjct 1615295 CGTGTCCTCCGTGACGCCAAGATCGACAAGTCCTCCGTCCACGAGATTGTTCTTGTTGGT 1615236 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 || ||||||||||| || ||||| || ||||| | || ||||||||| || || Sbjct 1615235 GGCTCAACCCGTATCCCCAAGATCCAGAAGATGGTCTCCGACTTCTTCAACGGCAAGGAG 1615176 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 1615175 CCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGCT 1615116 Query 196421 ATTCTCTCAGGTGTTGACAATAATAACGTCCA------AGATCTTCTGCTACTTGATGTT 196474 || || || |||| | | || ||||| ||||| || || || || || Sbjct 1615115 ATCCTGTCTGGTGACACCTCTTCCAA-GTCCACCAACGAGATC--CTCCTGCTCGACGTC 1615059 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 || || | ||| | ||| | || || || |||||||| |||||| | || | | Sbjct 1615058 GCTCCTCTCTCCATTGGTATCGAGACCGCTGGTGGTGTCATGACTCCTCTCATCAAGCGC 1614999 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || || || || |||||| | ||||| || || | ||||| || || || Sbjct 1614998 AACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCC 1614939 Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654 ||||| | ||| || || | || || || || | || | ||||| ||| | || || Sbjct 1614938 GGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAGGACAACAACCTGCTC 1614879 Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 || | ||||| | || || ||||| | || ||| | |||||||| ||||| | || Sbjct 1614878 GGCAAGTTCGAGCTTACCGGCATTCCCCCGGCGCCCCGTGGTGTTCCCCAGATCGAGGTC 1614819 Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774 ||||||| | || || || || || | |||||| | ||| || |||| | ||| Sbjct 1614818 ACCTTCGATGTTGATGCCAACGGTATCATCAACGTCTCCGCTCTCGAGAAGGGCACCGGC 1614759 Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834 || | | |||||||| || ||||| |||||||| || || || |||||||| || || Sbjct 1614758 AAGACCAACAAGATTGTCATCACCAACGACAAGGGCCGTCTGTCCAAGGAGGAGATCGAG 1614699 Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 |||||| || || || || ||||||| || || || |||| Sbjct 1614698 CGTATGCTTGCTGAGGCCGAGAAGTACAAGGCTGAGGATGAGG 1614656 Score = 197 bits (218), Expect = 2e-45 Identities = 390/575 (68%), Gaps = 9/575 (2%) Strand=Plus/Minus Query 195416 ACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATC 195475 ||||| | || ||||| | || || ||||||| || ||| || |||||||| | Sbjct 1616173 ACAGACACCGAGCGTCTGATCGGTGACTCCGCAAAGAACCAGGTCGCCATGAACCCCCAC 1616114 Query 195476 AATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAA 195535 || || ||||| ||||| ||||| || || || |||||||| || | ||||| Sbjct 1616113 AACACCGTCTTCGACGCCAAGCGCCTGATCGGCCGCAAGTTCAACGACGCTGAGGTCCAG 1616054 Query 195536 GACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATT 195595 | |||||| ||| ||| | | | |||||| | || || |||||| | | Sbjct 1616053 GCCGATATGAAGCACTTCCCCTTCAAGGTTGTT---GAGAAGGGTGGCAAGCCTGTTGTC 1615997 Query 195596 AATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTG 195655 | || || || | || ||| |||| || |||| || || || || || ||||| Sbjct 1615996 CAGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACTCCTGAGGAGATCTCCTCCATGGTC 1615937 Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715 ||| ||||||| ||||||||| || || | | | ||| || || || | || || Sbjct 1615936 CTGACCAAGATGAGGGAGACTGCTGAGTCCTACCTTGGTGGCACCGTCAACAACGCTGTC 1615877 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 || || || || || ||||||| || || || || ||||| || ||||| || | | Sbjct 1615876 GTTACCGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCTACCAAGGATGCCGGTCTC 1615817 Query 195776 ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || || || || ||| || | || ||||| || || || || ||||| || || || Sbjct 1615816 ATCGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTAC 1615757 Query 195836 GGTCTGGACAAGAACAAGGAC---GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGT 195892 ||||| |||||||| || | | || || || ||||||| ||||| |||||| Sbjct 1615756 GGTCTTGACAAGAA---GGCCTCTGGCGAGCGCAACGTCCTGATCTTCGATCTGGGTGGT 1615700 Query 195893 GGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACT 195952 ||||| || ||||| || || |||| ||||| | || || ||||| || ||| | ||| Sbjct 1615699 GGTACCTTCGATGTGTCGCTCCTCACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACT 1615640 Query 195953 GCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||| || |||||||| || ||||| Sbjct 1615639 GCCGGTGACACTCACCTTGGTGGTGAGGACTTCGA 1615605 Score = 170 bits (188), Expect = 3e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||| ||||| |||||||| ||||| ||||| ||| | || | Sbjct 1598679 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGAGC 1598620 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || ||||||||||||||||| || |||||||| || ||||| || ||||| || Sbjct 1598619 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCAAG 1598560 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || ||||| |||||| | | ||||||||| | || |||||||| || || ||| Sbjct 1598559 CAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTTCAC 1598500 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | || || |||||| Sbjct 1598499 CTCGTCCTCCGCCTGCGCGGTGGT 1598476 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || || || || || || |||||| | || ||||||| Sbjct 1598196 GTGGTATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGT 1598137 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| || || ||||| ||| |||| ||||||||| || ||||| || || || || | Sbjct 1598136 CGTCGGATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGG 1598077 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || || || || ||||| ||||| || || || || || ||| | || | Sbjct 1598076 ACCAGCAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACT 1598017 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||| ||||| ||||| || || | || || |||||| Sbjct 1598016 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCCGTGGTGGT 1597964 Score = 105 bits (116), Expect = 9e-18 Identities = 232/344 (67%), Gaps = 9/344 (3%) Strand=Plus/Plus Query 195650 ATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGAT 195709 ||||| ||| |||||||||||| ||| || | | | || | || || | | Sbjct 4880970 ATGGTCCTGAGCAAGATGAAGGAGGTTGCCGAGAACTACCTCGGCGAGACCGTTACCAAC 4881029 Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||||| || || || || ||||||| || | || || || || |||||||| Sbjct 4881030 GCCGTTGTTACGGTTCCCGCCTACTTCAACGACGCCCAGCGTGCCGCCACCAAGGACGCC 4881089 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | ||||| ||||| ||| ||| | | |||| || || || ||||| || | Sbjct 4881090 GGCACCATTGCCGGTCTCAACGTTCTCCGTGTCGTCAACGAGCCCACCGCGGCCGCTCTG 4881149 Query 195830 GCTTATGGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGAT 195883 || || || ||||||||||| |||| ||| || | || || | ||| ||| Sbjct 4881150 GCCTACGGCCTGGACAAGAAGGACGACAAG-ACGGAGCGCCAGATC-ATCG-TCTACGAT 4881206 Query 195884 CTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTA 195943 |||||||||||||| || ||||| || | || | | | || | ||| | ||||| || Sbjct 4881207 CTCGGTGGTGGTACTTTCGATGTTTCCATCCTGACTGTCGACGAGGGTGTTTTCGAGGTC 4881266 Query 195944 AAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||| |||||||| || || || |||||||| || || || Sbjct 4881267 CAGGCTACCGCTGGTGACACCCACCTTGGTGGTGAGGACTTTGA 4881310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862161524880