Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 105 2e-17 >seq3 Length=5700105 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 || |||| |||||| || || | || | || || |||| |||| | |||||| Sbjct 3195962 TGAACGCGGTAAGCGTCCGAGACTTCGAACAGACGCTCCTTCAAGAAGGCACTGGCACCG 3195903 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || ||||||||||||||||| ||||| || |||||||| |||||||| || || || | | Sbjct 3195902 TGAGAAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCACGGGCACGA 3195843 Query 251551 CCCTCGGCAGGCTGACGAGTGAG 251573 || ||| ||||||||||||| || Sbjct 3195842 CCTTCGACAGGCTGACGAGTAAG 3195820 Score = 102 bits (112), Expect = 2e-16 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 302590 AAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACA 302649 ||||||||||| || |||||||| | || || ||||| ||||| || ||||| | Sbjct 4413239 AAACGACGCTGGATGTAACCAGTCTCGGCAGTCTTGACAGCGGTATCGATAAGACCTTCG 4413298 Query 302650 CGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTC 302709 |||||| |||| || |||||||| | ||| || || || | | | ||| || Sbjct 4413299 CGACCAGCCATGGCGTGGAAGAAGAACTCAGAGGGGGTGAGACCACGGAGGTACGAGTTC 4413358 Query 302710 TCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 | |||||| || | ||| |||| || | |||| ||| || ||||| ||||| |||| Sbjct 4413359 TGAACGAAGCCTCTAGCCGCGGGGGAGTAGTCGTCCTTCGTGAAGTGCGGCAGAGTCCGA 4413418 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | || | ||||| | || |||||||| || || || ||||| || | || || Sbjct 4413419 TACTTAAAGCCGAAGGGAATACGCTTGCCCTCGACTGATTGCTGACCGACAAGCGCCGTC 4413478 Query 302830 ATCTGCGAAATATT 302843 ||||| ||||| || Sbjct 4413479 ATCTGGGAAATGTT 4413492 Score = 95.1 bits (104), Expect = 4e-14 Identities = 106/141 (75%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 ||||||||| | | |||||| ||||| | || ||||| ||| || | |||||||| Sbjct 4412446 CAGAATTTCCTTTAGACGGGGGACACCGAGTGTAACGTT---CTTCGATGAGACACCAGC 4412502 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| || |||||||| | || |||| ||||||||||| ||||| |||| Sbjct 4412503 AAAATGGAAGGTGTTCAGAGTCATCTGCGTAGCAGGCTCACCAATCGACTGTGCGGCAAG 4412562 Query 301932 CATACCAACCATTTCTCCTGG 301952 | ||| ||||||||||| || Sbjct 4412563 GACACCGACCATTTCTCCAGG 4412583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817053127773