Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 2e-17
>seq3
Length=5700105
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490
|| |||| |||||| || || | || | || || |||| |||| | ||||||
Sbjct 3195962 TGAACGCGGTAAGCGTCCGAGACTTCGAACAGACGCTCCTTCAAGAAGGCACTGGCACCG 3195903
Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550
|| ||||||||||||||||| ||||| || |||||||| |||||||| || || || | |
Sbjct 3195902 TGAGAAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCACGGGCACGA 3195843
Query 251551 CCCTCGGCAGGCTGACGAGTGAG 251573
|| ||| ||||||||||||| ||
Sbjct 3195842 CCTTCGACAGGCTGACGAGTAAG 3195820
Score = 102 bits (112), Expect = 2e-16
Identities = 175/254 (69%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 302590 AAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACA 302649
||||||||||| || |||||||| | || || ||||| ||||| || ||||| |
Sbjct 4413239 AAACGACGCTGGATGTAACCAGTCTCGGCAGTCTTGACAGCGGTATCGATAAGACCTTCG 4413298
Query 302650 CGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTC 302709
|||||| |||| || |||||||| | ||| || || || | | | ||| ||
Sbjct 4413299 CGACCAGCCATGGCGTGGAAGAAGAACTCAGAGGGGGTGAGACCACGGAGGTACGAGTTC 4413358
Query 302710 TCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769
| |||||| || | ||| |||| || | |||| ||| || ||||| ||||| ||||
Sbjct 4413359 TGAACGAAGCCTCTAGCCGCGGGGGAGTAGTCGTCCTTCGTGAAGTGCGGCAGAGTCCGA 4413418
Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829
| || | ||||| | || |||||||| || || || ||||| || | || ||
Sbjct 4413419 TACTTAAAGCCGAAGGGAATACGCTTGCCCTCGACTGATTGCTGACCGACAAGCGCCGTC 4413478
Query 302830 ATCTGCGAAATATT 302843
||||| ||||| ||
Sbjct 4413479 ATCTGGGAAATGTT 4413492
Score = 95.1 bits (104), Expect = 4e-14
Identities = 106/141 (75%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
||||||||| | | |||||| ||||| | || ||||| ||| || | ||||||||
Sbjct 4412446 CAGAATTTCCTTTAGACGGGGGACACCGAGTGTAACGTT---CTTCGATGAGACACCAGC 4412502
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||| ||||| || |||||||| | || |||| ||||||||||| ||||| ||||
Sbjct 4412503 AAAATGGAAGGTGTTCAGAGTCATCTGCGTAGCAGGCTCACCAATCGACTGTGCGGCAAG 4412562
Query 301932 CATACCAACCATTTCTCCTGG 301952
| ||| ||||||||||| ||
Sbjct 4412563 GACACCGACCATTTCTCCAGG 4412583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817053127773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |