Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 seq3 109 5e-19 >seq4 Length=4775223 Score = 123 bits (136), Expect = 2e-23 Identities = 723/1141 (63%), Gaps = 40/1141 (4%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| ||||||||||||| || || ||| ||| ||||| ||| ||||||| || Sbjct 4664911 ACCTGGAATTCACCGGCCAGGACGCGGCGAGAGTAGATGTTCGATGTGTAAGGCTCGAAG 4664852 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||| || ||||||||| ||| | || || |||||| || || | ||| Sbjct 4664851 CACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGACGAGCAGA 4664792 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT-TCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 || || || | |||||| | || ||| |||| || ||||||||| | ||| Sbjct 4664791 GAGTTGCGGATACCGTGCTGAGCAATCTCG-GCCTTCAGGCTATCCCAGTCCCAGAGATC 4664733 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 | | || | ||||||||||| |||||||| | || ||| | || || || || | Sbjct 4664732 GGTGGGAGTCTTGTTCCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGGCTACCCTG 4664673 Query 138747 GTACGAATCGTATACACC-AAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 | ||| || || ||| |||| || | |||| | || ||| ||| ||| Sbjct 4664672 GAACGTCTCATAAGGACCGTGGAGCTTG-GCAAGCTCGATCGAGGCAGTGAGGGCAGCAT 4664614 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 |||||| || ||| ||||| |||||| |||||||| | ||| | |||| Sbjct 4664613 GGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAGTCGAAAGGCA 4664554 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 ||||||| | ||| || || || || || | || ||||| | | ||||| || | Sbjct 4664553 TGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAATGGGGCGGTGAC 4664494 Query 138926 GCAGATTTGACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGTT 138983 || || | | |||| | || | | || || | ||| | |||||||| ||||| Sbjct 4664493 GC--ATGTTGCTCTTTCTAGCCTCAGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTT 4664436 Query 138984 TAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCC 139042 || || ||| | ||||| ||| | | | | | | | || ||||| | | Sbjct 4664435 CAAGTTCTTCACAAGCACCTGAGT-GACCTCGTGGAGCTTGTTGAAGTCGTAAAT---AC 4664380 Query 139043 CGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCG 139102 |||| | ||||||| || || | | | | || || | |||||| || | Sbjct 4664379 CGTTCT------CGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGG 4664326 Query 139103 CCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCG 139162 | ||||| |||||| | |||| ||||| || ||| || | ||| | || | Sbjct 4664325 CGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGAATGG 4664266 Query 139163 TACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTG 139222 | || | ||| | || ||||| || ||||| || || ||||| | ||| | || Sbjct 4664265 TGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGT 4664206 Query 139223 TGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA-TTTGA 139281 ||||||| || ||||| | ||| | ||| | ||| | | || | | | Sbjct 4664205 TGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTCT 4664146 Query 139282 CGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAG 139341 ||| | | | | || |||||||| |||||||| | ||||| || || || Sbjct 4664145 CGC-GGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATAC 4664087 Query 139342 GCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG 139401 |||| | ||| | | || | || || |||||||| | ||| ||||||| || | Sbjct 4664086 ACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCG 4664027 Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CT 139456 || ||| |||||||||| || |||||||| | |||| | | || || ||||| || Sbjct 4664026 ACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACT 4663967 Query 139457 TCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTG 139514 || | ||||| || | | || | | || |||||| || || || ||||| Sbjct 4663966 TCCTCCTTTCCG------TGGTTC-TTGCGAAGGTCGAGGAAACTGAACACATCGGCGTG 4663914 Query 139515 CCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTG 139571 ||| || || || |||||||| | ||||| || ||| || || || || |||| Sbjct 4663913 CCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTA 4663854 Query 139572 TCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCT-GTTCCGTTGG 139630 ||| ||| || ||| | ||||| | ||| || |||||| | ||| || ||||||| Sbjct 4663853 GCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACC-ATTGCTGGTGCCGTTGG 4663795 Query 139631 T 139631 | Sbjct 4663794 T 4663794 >seq3 Length=5700105 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || |||||||| || ||| | || Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1597903 GACACCATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1597844 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || |||||||||||| | | | || || || ||| Sbjct 1597843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAAC 1597784 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| | || |||| || ||| Sbjct 1597783 ATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGC 1597736 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || | ||||| || | | Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | || || || ||| Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| ||||| |||| Sbjct 1598011 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 1597977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897436912120