Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq13 192 9e-43
seq6 185 1e-40
seq10 140 5e-27
seq1 131 3e-24
seq4 116 6e-20
seq2 93.3 7e-13
>seq13
Length=938811
Score = 192 bits (212), Expect = 9e-43
Identities = 359/520 (69%), Gaps = 8/520 (2%)
Strand=Plus/Minus
Query 2411475 GTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCC 2411534
|||||||||| |||||| || ||| | || || ||||| | ||| || ||
Sbjct 694475 GTAGCCCAGCTTCGGCAGCGCCTCCTTCGCCAGCGCGAAAATCTTCCTCTGATCCACGCC 694416
Query 2411535 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAC 2411594
||||||||| |||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 694415 ACCAAACTGGACGTCGACGTCCAAGTACTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAT 694356
Query 2411595 GAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCTGGGCGGCG--GCCTTTTG 2411651
|| | ||| ||| |||| | || | |||||| |||| || || || ||||
Sbjct 694355 CAGACCGGACAGCAGCGCGTTGTCCGT-CTGCTTGACGACCTCAGCACCGGCGCGCTTTG 694297
Query 2411652 CGCCGTGC-CGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGC 2411710
|| ||||| || ||||| | | || |||| |||| ||||| | | ||||| | | |
Sbjct 694296 CGTCGTGCTCGGTGGTCATG-GTGC--TCAGACGCAGCAGGTCCATCATGTAGTCCGGAC 694240
Query 2411711 CATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCT 2411770
| |||||| ||||| || |||| || ||||| || || | || ||||||||| ||
Sbjct 694239 TCTTCTGGTACTCGCTACCCAGCACGAACTCGAGGCGGTCGACCGACACGCCAATGGCCT 694180
Query 2411771 GGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACG 2411830
|||| | ||||| || ||| ||| | | |||| | ||| || || |
Sbjct 694179 TGAGCGACTCGGTGATGACATACTTGTAGTACTTGGCGCGGTAGTTGACCAGCTCGATGG 694120
Query 2411831 GCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATC 2411890
||| |||| ||||| ||| ||| || | |||||| | |||||| | || | || |
Sbjct 694119 GCGCCTTGAGGTTGTCTAGGAAGGCATGAATGTCGGCGAGCAGGATCTTGACGTGGCAGC 694060
Query 2411891 CGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGC 2411950
| ||||| | ||| |||| | ||| | || || || || || |||| ||| ||| ||
Sbjct 694059 CCGCCTGCAAAAACGCGGCAATTTTTATCATTGGGACGAAATATCCCATATGAGGCCGGC 694000
Query 2411951 CCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTC 2411990
| |||| ||| |||||||| || || ||| || |||||
Sbjct 693999 CGGTCGTCGCAGTGCCCCAGTAGATCTTGAGTGGTCGCTC 693960
>seq6
Length=2952248
Score = 185 bits (204), Expect = 1e-40
Identities = 192/252 (76%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || || |||||| |||||| |||||||||||||| | ||
Sbjct 1057024 TGACACCTGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGA 1057083
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| || ||||| ||||| | || |
Sbjct 1057084 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTGCCAA 1057143
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | | |||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 1057144 GAGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCA 1057203
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || |||||||||| || ||| ||||| |||||||| || || ||||
Sbjct 1057204 TGCCCAGCAGGGCGACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCT 1057263
Query 794131 CGATGATGATCT 794142
|| | || ||||
Sbjct 1057264 CGGTAATAATCT 1057275
Score = 120 bits (132), Expect = 5e-21
Identities = 160/222 (72%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200
|| || | ||||||||| | |||||||| ||||||| || |||||||||| |
Sbjct 1057718 AAGCAGCGGGCCTCGGGAATCTGGACCTCGGAGCTGAAGCGCTCGACCAGGTTCTCGTTC 1057777
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
|||||||| || |||||||| || |||||||||||| ||| ||| ||||| |||
Sbjct 1057778 ACGATGCCATCCGACGCGGCGAAGAAAGCGAGGACGTGCGAGATGAAGAAGCGCTCATCG 1057837
Query 796261 TCGCTGA---GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317
||| ||| || | ||||| | ||| | |||||| | |||||| || |||
Sbjct 1057838 TCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCCTCAGCAGTC 1057897
Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359
|| || || ||||||||||| |||||||| | ||| ||| ||
Sbjct 1057898 CAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTGT 1057939
Score = 86.0 bits (94), Expect = 1e-10
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 794591 TGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCT 794650
||| ||| |||||||| ||||||||||||||||| ||||| ||||| || || |||||
Sbjct 1057647 TGATGTACGTGTCGATCAGGAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCT 1057706
Query 794651 GGAAGCCATAAAAGCAG 794667
||||||| || ||||||
Sbjct 1057707 GGAAGCCGTAGAAGCAG 1057723
>seq10
Length=1499934
Score = 140 bits (154), Expect = 5e-27
Identities = 250/369 (68%), Gaps = 4/369 (1%)
Strand=Plus/Minus
Query 2071614 GCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGC 2071673
||| |||| |||||||||||| | |||| ||||||||||| ||||| | ||| |
Sbjct 1070881 GCCGAGGTGCTGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCC 1070822
Query 2071674 ACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGT 2071733
||||| || | ||| ||| ||||||||||| ||| | | ||||| |||| |
Sbjct 1070821 GCCCGTGTCCAGCTGGGCCTCGACGATGGCCGTCCACAGCTCCCGCGCCTTGACCGTGCG 1070762
Query 2071734 CCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCA 2071793
| ||| |||| |||| ||| | || |||| || | |||
Sbjct 1070761 GCGGCCGCATCCCTCGCTCTCGTACCGCTCGTAGAGCGCGCCGAACTCGGCCCCATAGCA 1070702
Query 2071794 CTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCAC 2071853
||| || ||||| ||||| |||||| | |||| |||||||| | | | ||
Sbjct 1070701 ATCGACGAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCGATCCGCGTCGAC 1070642
Query 2071854 GCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTC 2071911
||| ||||| |||||||| | || |||||| |||| ||||| |||||||| |
Sbjct 1070641 GCGCCGCATGAACAGGTCCGGTAC--CCACAGCGCGTAGCGCAGATCCCGCGCCCGCAGC 1070584
Query 2071912 TCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGC 2071971
|||||||||||| | | ||||| ||| |||||| || ||||||||||||||||
Sbjct 1070583 TCCTCCTTGCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGC 1070524
Query 2071972 TCCAGGTAG 2071980
|||||||||
Sbjct 1070523 TCCAGGTAG 1070515
>seq1
Length=6723813
Score = 131 bits (144), Expect = 3e-24
Identities = 98/115 (85%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| ||||||||||||||||||||| | ||||||||| | || |||||||| || ||||||
Sbjct 539776 GCTGCCAACTACCTCGACATCAAGGCGCTCCTCGATGTCGGCTGCAAGACTGTTGCCAAC 539835
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| |||||||||||||| ||||| || ||||||||||| || |||||| || |||
Sbjct 539836 ATGATCAAGGGCAAGTCTCCCGATGAGATCCGCAAGACGTTCAACATCCAGAACG 539890
>seq4
Length=4775223
Score = 116 bits (128), Expect = 6e-20
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| |||||| || ||||| || |||| ||| |||||||||||||||| | || || ||
Sbjct 4663868 GCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATT 4663809
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
| ||||||||| || || | |||| ||| | ||| || | ||| || |
Sbjct 4663808 GCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAG 4663749
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|||||||| || || | ||| ||||| | ||||| | || ||||| |||||||||||
Sbjct 4663748 ACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 4663689
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755
|||||| ||| |||||||||| | || ||||| ||
Sbjct 4663688 CTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAAGA 4663650
Score = 105 bits (116), Expect = 1e-16
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919
||| ||||||||| |||| || |||| || || || ||||| ||| ||||||||
Sbjct 4664018 CATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTT 4663959
Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979
||||||||||| |||||||| | || | ||||||||||||||||| |||||
Sbjct 4663958 TCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTA 4663899
Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
| ||||||||||||| ||||||| |||||
Sbjct 4663898 GATGGCAAAGGCGCCCGGGCGCTTGTTACCGCC 4663866
>seq2
Length=6116231
Score = 93.3 bits (102), Expect = 7e-13
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 2019238 ACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACA 2019297
|| || | ||||| | || || |||||||| ||| || ||||||| || || |
Sbjct 2786206 ACAGCATGACGTCCGGTGCGCAACAGGCCCTACGACGAACTATGGAAATCTATTCCTCGA 2786147
Query 2019298 CGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCC 2019357
|||| ||||||||| | ||||||||| ||| | | |||||||| | || ||| ||
Sbjct 2786146 CGACCCGGTTTGCGTTCGCCTGCAACCAATCGAATAAGATCATCGAACCGCTTCAGTCCC 2786087
Query 2019358 GTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398
| |||||||||||||||| | | || | |||||||| |||
Sbjct 2786086 GCTGCGCCATCTTGCGCTATTCCCGATTGACCGACGCGCAG 2786046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243315137731
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |