Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13 192 9e-43 seq6 185 1e-40 seq10 140 5e-27 seq1 131 3e-24 seq4 116 6e-20 seq2 93.3 7e-13 >seq13 Length=938811 Score = 192 bits (212), Expect = 9e-43 Identities = 359/520 (69%), Gaps = 8/520 (2%) Strand=Plus/Minus Query 2411475 GTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCC 2411534 |||||||||| |||||| || ||| | || || ||||| | ||| || || Sbjct 694475 GTAGCCCAGCTTCGGCAGCGCCTCCTTCGCCAGCGCGAAAATCTTCCTCTGATCCACGCC 694416 Query 2411535 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAC 2411594 ||||||||| |||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 694415 ACCAAACTGGACGTCGACGTCCAAGTACTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAT 694356 Query 2411595 GAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCTGGGCGGCG--GCCTTTTG 2411651 || | ||| ||| |||| | || | |||||| |||| || || || |||| Sbjct 694355 CAGACCGGACAGCAGCGCGTTGTCCGT-CTGCTTGACGACCTCAGCACCGGCGCGCTTTG 694297 Query 2411652 CGCCGTGC-CGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGC 2411710 || ||||| || ||||| | | || |||| |||| ||||| | | ||||| | | | Sbjct 694296 CGTCGTGCTCGGTGGTCATG-GTGC--TCAGACGCAGCAGGTCCATCATGTAGTCCGGAC 694240 Query 2411711 CATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCT 2411770 | |||||| ||||| || |||| || ||||| || || | || ||||||||| || Sbjct 694239 TCTTCTGGTACTCGCTACCCAGCACGAACTCGAGGCGGTCGACCGACACGCCAATGGCCT 694180 Query 2411771 GGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACG 2411830 |||| | ||||| || ||| ||| | | |||| | ||| || || | Sbjct 694179 TGAGCGACTCGGTGATGACATACTTGTAGTACTTGGCGCGGTAGTTGACCAGCTCGATGG 694120 Query 2411831 GCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATC 2411890 ||| |||| ||||| ||| ||| || | |||||| | |||||| | || | || | Sbjct 694119 GCGCCTTGAGGTTGTCTAGGAAGGCATGAATGTCGGCGAGCAGGATCTTGACGTGGCAGC 694060 Query 2411891 CGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGC 2411950 | ||||| | ||| |||| | ||| | || || || || || |||| ||| ||| || Sbjct 694059 CCGCCTGCAAAAACGCGGCAATTTTTATCATTGGGACGAAATATCCCATATGAGGCCGGC 694000 Query 2411951 CCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTC 2411990 | |||| ||| |||||||| || || ||| || ||||| Sbjct 693999 CGGTCGTCGCAGTGCCCCAGTAGATCTTGAGTGGTCGCTC 693960 >seq6 Length=2952248 Score = 185 bits (204), Expect = 1e-40 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||||||||| | || Sbjct 1057024 TGACACCTGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGA 1057083 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| || ||||| ||||| | || | Sbjct 1057084 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTGCCAA 1057143 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | |||||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct 1057144 GAGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCA 1057203 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||||||||| || ||| ||||| |||||||| || || |||| Sbjct 1057204 TGCCCAGCAGGGCGACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCT 1057263 Query 794131 CGATGATGATCT 794142 || | || |||| Sbjct 1057264 CGGTAATAATCT 1057275 Score = 120 bits (132), Expect = 5e-21 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||||||||| | |||||||| ||||||| || |||||||||| | Sbjct 1057718 AAGCAGCGGGCCTCGGGAATCTGGACCTCGGAGCTGAAGCGCTCGACCAGGTTCTCGTTC 1057777 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||| || |||||||| || |||||||||||| ||| ||| ||||| ||| Sbjct 1057778 ACGATGCCATCCGACGCGGCGAAGAAAGCGAGGACGTGCGAGATGAAGAAGCGCTCATCG 1057837 Query 796261 TCGCTGA---GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| ||| || | ||||| | ||| | |||||| | |||||| || ||| Sbjct 1057838 TCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCCTCAGCAGTC 1057897 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 || || || ||||||||||| |||||||| | ||| ||| || Sbjct 1057898 CAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTGT 1057939 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 794591 TGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCT 794650 ||| ||| |||||||| ||||||||||||||||| ||||| ||||| || || ||||| Sbjct 1057647 TGATGTACGTGTCGATCAGGAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCT 1057706 Query 794651 GGAAGCCATAAAAGCAG 794667 ||||||| || |||||| Sbjct 1057707 GGAAGCCGTAGAAGCAG 1057723 >seq10 Length=1499934 Score = 140 bits (154), Expect = 5e-27 Identities = 250/369 (68%), Gaps = 4/369 (1%) Strand=Plus/Minus Query 2071614 GCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGC 2071673 ||| |||| |||||||||||| | |||| ||||||||||| ||||| | ||| | Sbjct 1070881 GCCGAGGTGCTGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCC 1070822 Query 2071674 ACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGT 2071733 ||||| || | ||| ||| ||||||||||| ||| | | ||||| |||| | Sbjct 1070821 GCCCGTGTCCAGCTGGGCCTCGACGATGGCCGTCCACAGCTCCCGCGCCTTGACCGTGCG 1070762 Query 2071734 CCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCA 2071793 | ||| |||| |||| ||| | || |||| || | ||| Sbjct 1070761 GCGGCCGCATCCCTCGCTCTCGTACCGCTCGTAGAGCGCGCCGAACTCGGCCCCATAGCA 1070702 Query 2071794 CTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCAC 2071853 ||| || ||||| ||||| |||||| | |||| |||||||| | | | || Sbjct 1070701 ATCGACGAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCGATCCGCGTCGAC 1070642 Query 2071854 GCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTC 2071911 ||| ||||| |||||||| | || |||||| |||| ||||| |||||||| | Sbjct 1070641 GCGCCGCATGAACAGGTCCGGTAC--CCACAGCGCGTAGCGCAGATCCCGCGCCCGCAGC 1070584 Query 2071912 TCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGC 2071971 |||||||||||| | | ||||| ||| |||||| || |||||||||||||||| Sbjct 1070583 TCCTCCTTGCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGC 1070524 Query 2071972 TCCAGGTAG 2071980 ||||||||| Sbjct 1070523 TCCAGGTAG 1070515 >seq1 Length=6723813 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||||||| | ||||||||| | || |||||||| || |||||| Sbjct 539776 GCTGCCAACTACCTCGACATCAAGGCGCTCCTCGATGTCGGCTGCAAGACTGTTGCCAAC 539835 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| ||||| || ||||||||||| || |||||| || ||| Sbjct 539836 ATGATCAAGGGCAAGTCTCCCGATGAGATCCGCAAGACGTTCAACATCCAGAACG 539890 >seq4 Length=4775223 Score = 116 bits (128), Expect = 6e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||||||||||| | || || || Sbjct 4663868 GCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATT 4663809 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 | ||||||||| || || | |||| ||| | ||| || | ||| || | Sbjct 4663808 GCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAG 4663749 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||| || || | ||| ||||| | ||||| | || ||||| ||||||||||| Sbjct 4663748 ACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 4663689 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 |||||| ||| |||||||||| | || ||||| || Sbjct 4663688 CTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAAGA 4663650 Score = 105 bits (116), Expect = 1e-16 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||||||| |||| || |||| || || || ||||| ||| |||||||| Sbjct 4664018 CATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTT 4663959 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 ||||||||||| |||||||| | || | ||||||||||||||||| ||||| Sbjct 4663958 TCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTA 4663899 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||||||||||||| ||||||| ||||| Sbjct 4663898 GATGGCAAAGGCGCCCGGGCGCTTGTTACCGCC 4663866 >seq2 Length=6116231 Score = 93.3 bits (102), Expect = 7e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 2019238 ACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACA 2019297 || || | ||||| | || || |||||||| ||| || ||||||| || || | Sbjct 2786206 ACAGCATGACGTCCGGTGCGCAACAGGCCCTACGACGAACTATGGAAATCTATTCCTCGA 2786147 Query 2019298 CGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCC 2019357 |||| ||||||||| | ||||||||| ||| | | |||||||| | || ||| || Sbjct 2786146 CGACCCGGTTTGCGTTCGCCTGCAACCAATCGAATAAGATCATCGAACCGCTTCAGTCCC 2786087 Query 2019358 GTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 | |||||||||||||||| | | || | |||||||| ||| Sbjct 2786086 GCTGCGCCATCTTGCGCTATTCCCGATTGACCGACGCGCAG 2786046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243315137731