Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 1e-13
>seq3
Length=5700105
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| || | || ||||| ||||| || |||| ||| || |
Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || || | ||| ||| |||
Sbjct 1597903 GACACCATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1597844
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| || ||||| ||||||||||| | || | |||||||||||
Sbjct 1597843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAAC 1597784
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||||| || ||||| |||||
Sbjct 1597783 ATTCAGAAGGAGTCGACCCTGCACTTGGTG 1597754
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || | || ||||| ||||| ||| | ||| ||| |
Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | | || || |||||| || || || || | ||| ||| |||
Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | |||||||| ||||||||||||| || | |||||||||||
Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || |||||||| || | ||| ||||| ||
Sbjct 1598011 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTG 1597979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398876659021981
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |