Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 >seq3 Length=5700105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| ||| || || |||||||| || || Sbjct 1597964 ACCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 1598023 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| |||| || || || || || |||| |||||||| || | || Sbjct 1598024 GAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1598083 Query 33642 CACACCTTCTTTGTCGGCAATTTT-CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | ||| || ||||| ||| || || || || | ||| | ||| || || || Sbjct 1598084 GATACCCTCCTTGTCCTGAATCTTGCTCTTG--ACGTTGTCGATGGTATCCGACGACTCA 1598141 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || || || | ||| || || |||||||||||| Sbjct 1598142 ACTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 1598192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703883823680