Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10 152 5e-32 seq6 138 1e-27 seq4 123 2e-23 >seq10 Length=1499934 Score = 152 bits (168), Expect = 5e-32 Identities = 321/467 (69%), Gaps = 19/467 (4%) Strand=Plus/Minus Query 147556 TGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 ||||| ||||| || | ||||| ||||| ||| | |||| | ||| ||||| || || Sbjct 1070871 TGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCCGCCCGTGTCC 1070812 Query 147616 ACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGG 147675 | || | || ||||| | | ||| ||| |||| ||| | || || Sbjct 1070811 AGCTGGGCCTCGACGATGGCCGTCCACAGCTCCCGCGCCTTGACCGTGCGGCGGCCGCAT 1070752 Query 147676 CCCTCGTTTTCGTACCGCTCGTACAAC-CGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 |||||| | |||||||||||||| | | ||| | |||||| | || ||||||||| | || Sbjct 1070751 CCCTCGCTCTCGTACCGCTCGTAGAGCGCGC-CGAACTCGGCCCCATAGCAATCGACGAG 1070693 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCG---TCCGCGTTAACGCGTCG 147791 ||||| |||| ||| |||||||||| ||| |||| ||||||| ||||| || Sbjct 1070692 CCCGGGGCACTCGGCCGGGCACATCAGCGTCCA---GTCGCGATCCGCGTCGACGCGCCG 1070636 Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA-ATCCTCGG 147850 ||| ||||| ||||| |||||||||||||| ||||| ||||| ||| ||||| Sbjct 1070635 CATGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGATCCCGCGC-CCGCAGCTCCTCCT 1070577 Query 147851 CGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGT 147910 ||| | | |||| || || || | | ||| |||||||||||| || || | || Sbjct 1070576 TGCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGCTCCAGGT 1070517 Query 147911 AGACGGCCAG--CGCACCTTTACGCT-TTCCGCCCTGGTCGACATGGCGCACCATGTTGT 147967 |||| || || || || | ||| | | ||| | ||| ||||| || ||| || Sbjct 1070516 AGACAGCGAGATTGCTACTGT-TGCTGCTGCTCCCAG--CGA---GGCGCGCCGTGTCGT 1070463 Query 147968 TAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 | || ||||||| |||||| | | ||| | || || |||| |||| Sbjct 1070462 TGAAGACGCGCAGCATGGGCACGACGCCCTTTGCCGTCCCGTCGGTG 1070416 >seq6 Length=2952248 Score = 138 bits (152), Expect = 1e-27 Identities = 250/359 (70%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| ||||| || ||| |||||| | ||||| || ||||| ||| | ||||| ||| Sbjct 1057393 ATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGTGACGAGGGAATGCACACCGAC 1057334 Query 46974 TTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCT 47032 ||||| || || || || ||| | | || ||| | | | || | || Sbjct 1057333 TTTGCCTGCCTGCTGTTCT----CGCACATCAAGTCGAAGCCCAGCCCTGAGGCCGTCGA 1057278 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGT 47092 || || ||| ||||| ||| ||||| |||||||| | || | ||||||||||| Sbjct 1057277 GAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGCCCGT 1057218 Query 47093 CGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATC 47151 |||| |||||||||||||||| || || |||||| | || || ||||| || || || | Sbjct 1057217 CGCCCTGCTGGGCATGAACGC-CAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACC 1057159 Query 47152 GTCTGTTGGTGCAGCTCGGACAAC-CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTT 47210 | ||| ||||| || || |||| ||| || | || || || || || || || Sbjct 1057158 GCCTGCTGGTGGCTCTTGG-CAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTC 1057100 Query 47211 ATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| | ||||| |||||| | ||||| ||||| || |||||||| || || || || || Sbjct 1057099 ATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 1057041 >seq4 Length=4775223 Score = 123 bits (136), Expect = 2e-23 Identities = 795/1259 (63%), Gaps = 39/1259 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| || || || || || ||||| || || | |||| || | || ||| |||| Sbjct 4664917 TTGACAACCTGGAATTCACCGGCCAGGACGCGGC-GAGAGTAGATGTTCGATGTGTAAGG 4664859 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| || || | || || ||| | || ||||||||| || || Sbjct 4664858 CTCGAAGCACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGAC 4664799 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 | || || || || | ||||| | | || | | |||||| | | ||||||||| Sbjct 4664798 GAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCCA 4664739 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | ||| ||| ||||||||||||||||||||| | || || ||| || Sbjct 4664738 GAGATCG--GTGGGAGTCTTGTTCCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGG 4664681 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGC 147189 || || |||||| || |||| | ||| || | || || ||| Sbjct 4664680 CTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATCGAGGCAGTGAGG 4664621 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || ||| ||| ||||| ||| ||| || |||| || | || || | ||| Sbjct 4664620 GCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAGTCG 4664561 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 ||||||| || ||| || |||||||| || | ||| | || ||| || | || || Sbjct 4664560 AAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAATGGGG 4664501 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAAT 147368 || || |||||| | || ||| | | || ||||||||| || || || Sbjct 4664500 CGGTGACGCATGTTGCTCTTTCTAGC-CTCAGGCACCGGGTAGTGGTTGATGTCGATGAT 4664442 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||| | ||| ||| | || | ||| | | ||| || | ||| || ||| | Sbjct 4664441 CTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAAAT 4664382 Query 147429 CCCGTCTTCGACACGTACGCATTGGTTC--ACGGCGATAGACGCCAGATTGCAGACGGCC 147486 |||| ||||| ||| | ||| | || | || |||| ||||||||||| Sbjct 4664381 ACCGTTCTCGACGTCCACGAA--GGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCG 4664324 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATTTTATG 147543 || |||| | | |||||| ||||| ||| ||| ||||| ||||| | || Sbjct 4664323 ACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTG 4664264 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 || | ||| | ||| ||||| || || ||||| ||| ||| | | |||| | || Sbjct 4664263 ---CCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGG 4664207 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCACCCG 147662 ||| ||||||||||| | || | || | | || ||| | |||||| || || Sbjct 4664206 TTGCCAGTCTCGACTTGAGCCTCGA-GAATAGCGTACCACAGCTTCTGCGCCCGGACAGT 4664148 Query 147663 CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTA 147722 || || |||||||| || |||||| ||||||| | ||| ||||| ||||| || Sbjct 4664147 CTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATA 4664088 Query 147723 GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782 || || || || || || | | || ||||| || | ||| || ||| | | Sbjct 4664087 CACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTC 4664028 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA 147842 || || ||| ||||| || || | ||| || ||||| | || || ||||| | Sbjct 4664027 GACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGAC 4663968 Query 147843 ATCCTCGGCGCCCATGTTGCGTTTCAAA--TTAAGCACGCTATAGATGTCGGCGTGCCAG 147900 ||||| || ||| || | || | || | || | | ||||||||||| Sbjct 4663967 TTCCTCCTTTCCGTGGTT--CTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCAC 4663910 Query 147901 GGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGC 147957 || |||| ||||| ||| | || || ||| || ||||||||||| || | ||| Sbjct 4663909 GGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGT 4663850 Query 147958 ACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT---G 148014 | ||||||| | ||||| | |||||| ||| || | ||||||||||| | Sbjct 4663849 GCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGTACCG 4663790 Query 148015 GAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCG 148074 | | || | ||||||| ||| || | ||| ||||| | || ||||| || || Sbjct 4663789 GCA---ATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCAGCG 4663733 Query 148075 TACTTTGATATGGCAGCGCA---ATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTC 148130 ||| || || ||||| | | | |||| ||||||||| ||||||||||| Sbjct 4663732 GTCTTAGAGATCATGGCGCAGGTCTTGAGC-GTGTC--GTAGATGCCCTCGATGCTGTC 4663677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611027228440