Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 183 4e-40 seq4 120 4e-21 >seq6 Length=2952248 Score = 183 bits (202), Expect = 4e-40 Identities = 219/294 (74%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| || || ||||| || |||||| | |||| Sbjct 1057936 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACC 1057878 Query 1455835 TCGGCGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 || | ||| | ||||| | ||| | | |||||| |||||| ||||| Sbjct 1057877 TCTCCAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGACGATGAGCGCTTCTTCAT 1057820 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | |||||||||||| ||| |||||||| |||||||||||| ||||||||||| || Sbjct 1057819 CTCGCACGTCCTCGC-TTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCG 1057761 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 1057760 AGCGCTTCAGCTCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCA 1057701 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || || ||||| ||||| || ||||||||||||||||||||||| ||| ||| Sbjct 1057700 TGATGGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCA 1057647 Score = 163 bits (180), Expect = 4e-34 Identities = 194/258 (75%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||| || |||||| || || |||||||| ||||| ||| || ||||||| | Sbjct 1057278 AGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGCCCG 1057219 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 | || || | ||||||||||||| | ||||||||||||||||| || || |||||||| Sbjct 1057218 TCGCCCTGCTGGGCATGAACGCCAAC-CTCATGTGCCAGTACATCGAGTTC-GTCGCCGA 1057161 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||||||||| | ||| || ||| | ||||| ||||| || ||||||| ||| | Sbjct 1057160 CCGCCTGCTGGTGGCTCTTGGCAACA-AGAAGTACTACAACGCGACCAACCCCTTCGACT 1057102 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756 |||||| ||||||||| | |||||||||||||| |||||| |||| ||| || | Sbjct 1057101 TCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACT 1057042 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||| || |||| Sbjct 1057041 ACCAGAAGGCAGGTGTCA 1057024 >seq4 Length=4775223 Score = 120 bits (132), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 259931 CTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAG 259990 || || || ||||| || || |||||| | || ||||| || | ||||||||| Sbjct 4663614 CTGTTCAACGCCGGAACTCCCAAGCCGCAGCTGGCATCTTGCTTCCTCATCGACATGAAG 4663673 Query 259991 GCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCG 260050 | || |||||||||||||| |||||||||||| ||||| | ||||| ||| | Sbjct 4663674 GAGGACAGCATCGAGGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCTAAGACC 4663733 Query 260051 GCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGC 260110 || || ||||||||| | || ||| | || ||| | ||| |||| | || || Sbjct 4663734 GCTGGAGGCATCGGTCTCAACGTCCACCGCATCCGTGCCACCGGCAGCTACATTGCCGGT 4663793 Query 260111 ACCAACGG--CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGC 260168 |||||||| |||| ||| || || | |||||||| ||||| | ||| |||| || | Sbjct 4663794 ACCAACGGCACCAG--CAATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTGCAC 4663851 Query 260169 GCTACGTCGACCAGTGC 260185 ||||||| |||||| || Sbjct 4663852 GCTACGTTGACCAGGGC 4663868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808402896698