Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3 109 6e-19 seq4 91.5 1e-13 seq5 84.2 2e-11 seq2 84.2 2e-11 seq6 82.4 8e-11 >seq3 Length=5700105 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| |||||||||||||| | ||| || Sbjct 1597746 AGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGA 1597805 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || ||||| | ||||||||| || || || || || || Sbjct 1597806 CCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCC 1597865 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | |||||||| |||||||| ||||| || Sbjct 1597866 TTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGCGTG 1597925 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || |||||||| ||||| Sbjct 1597926 ATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| || || || || |||| |||||||| || || || Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || ||||| || || Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACT 1598144 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || ||||| | || || ||||| || ||||| Sbjct 1598145 TCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||| ||||| || |||||||||||| | ||| | ||| ||| Sbjct 1598211 ACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCG 1598270 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| ||||||||||| || || ||||| || || ||||| Sbjct 1598271 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 1598330 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || || || || ||||| || Sbjct 1598331 ATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTG 1598390 Query 134685 CCGGT 134689 ||||| Sbjct 1598391 CCGGT 1598395 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 |||||||| || || || ||||| || |||||||| || | ||| ||| | || || Sbjct 1598495 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAA-GGTACGGCCATCCTC 1598553 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| ||||| || || || | |||||||||||| || || |||||||| || || || Sbjct 1598554 GAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTG 1598613 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || ||| | ||||||||||| || || || || || ||||| || Sbjct 1598614 GATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTT 1598673 Query 134684 ACCGGT 134689 ||||| Sbjct 1598674 GCCGGT 1598679 >seq4 Length=4775223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 174/252 (69%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATA 7793 || ||||||||||| ||||| ||| ||||||| | || ||||||| || || || Sbjct 4663674 GAGGACAGCATCGAGGGCATCTACGACACGCT-CAAGACCTGCGCCATGATCTCTAAGAC 4663732 Query 7794 CGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTC 7853 || || || || ||||| ||||| || | | || |||| ||| ||| ||| | Sbjct 4663733 CGCTGGAGGCATCGGTCTCAACGTCCACCGCATCCGTGCCACCGGCAGCTACATTGCCGG 4663792 Query 7854 CACCAACGGAAAAGCCAGC---GGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGT 7910 |||||||| | ||||| ||| | |||||| | ||||| | ||| ||| | | Sbjct 4663793 TACCAACGGCA---CCAGCAATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTGC 4663849 Query 7911 GCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCC 7967 || | || |||||||| || |||||| |||||| ||||||||| | ||||| Sbjct 4663850 ACGCTACGTTGACCAGGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGAGCC 4663909 Query 7968 GTGGCACGCGGA 7979 ||||||||| || Sbjct 4663910 GTGGCACGCCGA 4663921 >seq5 Length=4159236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | || |||||||| ||||| || || | Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || || || ||||| || || || || || || ||||| || Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || || ||||| || || || | || || |||| Sbjct 355175 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 355234 Query 134704 A 134704 | Sbjct 355235 A 355235 >seq2 Length=6116231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || ||||| ||||| || ||||||||||| | ||| | Sbjct 4767937 AGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGG 4767878 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || |||| ||||||||| || || || ||||| || Sbjct 4767877 CCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 4767818 Query 134616 TTTTCT 134621 || ||| Sbjct 4767817 TTGTCT 4767812 >seq6 Length=2952248 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 21422 TCTTGTATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTT 21481 ||| ||| || || || || | || ||||| || || || || | || | ||||| | Sbjct 1057036 TCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCT 1057095 Query 21482 TCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTT--CAATT-CCACGC 21538 ||| || | || || ||| | |||| | || ||||| ||| ||| |||| Sbjct 1057096 CCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTAC--TTCTT-GTTGCCAAGAGCCACCA 1057152 Query 21539 ACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACA 21598 || || || || ||||| || ||||| || |||||| || | |||||||||| || Sbjct 1057153 GCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCA 1057212 Query 21599 GATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 | |||| || ||||| || |||| ||||||||||||||| |||| || || Sbjct 1057213 GGGCGACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTC 1057264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398216793080