Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq3 102 7e-17 >seq4 Length=4775223 Score = 111 bits (122), Expect = 1e-19 Identities = 416/638 (65%), Gaps = 21/638 (3%) Strand=Plus/Minus Query 131405 ATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACA-TGGTCCTTGTACATCATGTA 131463 |||||||| | ||| | || ||||| || || | || ||||||||||||| |||| | Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGTACAACATGAA 4664211 Query 131464 GGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT---GTATCGAAAGAGTTTTCGAGCAGA 131520 ||| |||| || |||||||||| || | ||| ||| | | || | | || | || Sbjct 4664210 GGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACC-ACAGCTTCTGCGCCCGGA 4664152 Query 131521 CAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTG 131580 || | | | |||| || ||||| | ||||| | | || || | | Sbjct 4664151 CAGTC--TCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTC 4664094 Query 131581 GCCAAACGAA-CTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGT 131639 |||| || ||| ||| | || |||||| |||| ||||| || | ||| ||||| Sbjct 4664093 GCCATACACGTCTG-CCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGT 4664035 Query 131640 TCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAG 131699 |||| || || |||||||| |||| || || | ||| | ||||| ||||| || | | Sbjct 4664034 TCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCG 4663975 Query 131700 CTTTT--TTCTCTTCTGTACCCATAAtttttttCAAATTTAA--AAAGTCCAAAATGTCC 131755 | ||| || || | || | || || || | | ||| | || | || Sbjct 4663974 CGCGGACTTC-CTCCTTT--CCGTGGTTCTTGCGAAGGTCGAGGAAACTG-AACACATCG 4663919 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTA 131812 || ||||| || || | || | || | ||||| |||||| |||||| || | | Sbjct 4663918 GCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCA 4663859 Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872 || | || | |||||||||| ||||| | |||||| || ||| ||| | | || Sbjct 4663858 ACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCG 4663799 Query 131873 TTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCT 131932 ||||| | |||||||||||| |||| | ||| ||| |||||||| || || ||| Sbjct 4663798 TTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCT 4663739 Query 131933 CCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTG 131992 || || |||||||| | ||||| | | || |||| ||||| || || | |||| Sbjct 4663738 CCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTG 4663679 Query 131993 TCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030 ||| | ||||||| | |||||||| | || ||| Sbjct 4663678 TCCTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTG 4663641 >seq3 Length=5700105 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || |||| || | ||||| || | || || || || ||||| |||||||| Sbjct 1597736 GCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 1597795 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | || || ||||| ||||| ||| ||||||||||||| || ||||| || Sbjct 1597796 GAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1597855 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || ||||||| | |||| | | || | ||||| | | ||| || Sbjct 1597856 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| || || || || || || || |||||| Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATA 1597964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934249812248