Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4 111 1e-19
seq3 102 7e-17
>seq4
Length=4775223
Score = 111 bits (122), Expect = 1e-19
Identities = 416/638 (65%), Gaps = 21/638 (3%)
Strand=Plus/Minus
Query 131405 ATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACA-TGGTCCTTGTACATCATGTA 131463
|||||||| | ||| | || ||||| || || | || ||||||||||||| |||| |
Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGTACAACATGAA 4664211
Query 131464 GGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT---GTATCGAAAGAGTTTTCGAGCAGA 131520
||| |||| || |||||||||| || | ||| ||| | | || | | || | ||
Sbjct 4664210 GGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACC-ACAGCTTCTGCGCCCGGA 4664152
Query 131521 CAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTG 131580
|| | | | |||| || ||||| | ||||| | | || || | |
Sbjct 4664151 CAGTC--TCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTC 4664094
Query 131581 GCCAAACGAA-CTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGT 131639
|||| || ||| ||| | || |||||| |||| ||||| || | ||| |||||
Sbjct 4664093 GCCATACACGTCTG-CCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGT 4664035
Query 131640 TCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAG 131699
|||| || || |||||||| |||| || || | ||| | ||||| ||||| || | |
Sbjct 4664034 TCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCG 4663975
Query 131700 CTTTT--TTCTCTTCTGTACCCATAAtttttttCAAATTTAA--AAAGTCCAAAATGTCC 131755
| ||| || || | || | || || || | | ||| | || | ||
Sbjct 4663974 CGCGGACTTC-CTCCTTT--CCGTGGTTCTTGCGAAGGTCGAGGAAACTG-AACACATCG 4663919
Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTA 131812
|| ||||| || || | || | || | ||||| |||||| |||||| || | |
Sbjct 4663918 GCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCA 4663859
Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872
|| | || | |||||||||| ||||| | |||||| || ||| ||| | | ||
Sbjct 4663858 ACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCG 4663799
Query 131873 TTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCT 131932
||||| | |||||||||||| |||| | ||| ||| |||||||| || || |||
Sbjct 4663798 TTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCT 4663739
Query 131933 CCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTG 131992
|| || |||||||| | ||||| | | || |||| ||||| || || | ||||
Sbjct 4663738 CCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTG 4663679
Query 131993 TCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030
||| | ||||||| | |||||||| | || |||
Sbjct 4663678 TCCTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTG 4663641
>seq3
Length=5700105
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| || |||| || | ||||| || | || || || || ||||| ||||||||
Sbjct 1597736 GCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 1597795
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| |||| | || || ||||| ||||| ||| ||||||||||||| || ||||| ||
Sbjct 1597796 GAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1597855
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||| || || ||||||| | |||| | | || | ||||| | | ||| ||
Sbjct 1597856 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | ||||| || || || || || || || ||||||
Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATA 1597964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424934249812248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |