Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 1e-15 >seq4 Length=4775223 Score = 98.7 bits (108), Expect = 1e-15 Identities = 302/462 (65%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| || | || ||||| ||||| || || ||||| | |||||||| | Sbjct 4664356 GGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACG 4664297 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || | ||| || || ||| || || | |||||| ||||| ||||| | Sbjct 4664296 ATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGG 4664237 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||| | |||| |||| | || ||||| || | | ||||||| Sbjct 4664236 TTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATA 4664177 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || | ||| | | || ||| | || ||| | || | | || |||||| |||||||| Sbjct 4664176 GCGTACCACAGCTTCTGCGCCCGG-ACAGTCTCGCGGCCACGGCCCTCCTTCTCGTACTG 4664118 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTG 111527 |||||| || || |||||||| || | |||| | ||||| || || || || | Sbjct 4664117 CTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGG-GCATTCGTTGG 4664059 Query 111528 GACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | || | ||| || | ||| || ||||||||||| ||||| ||||||| Sbjct 4664058 GGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCC 4663999 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 | || | | || || || | || | || || | || ||||| || | | Sbjct 4663998 AGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGT 4663939 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 111689 | ||||| | | ||| |||||||| |||||||| |||| Sbjct 4663938 CGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGA 4663897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031772338400