Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 7e-25
seq6 123 3e-23
>seq4
Length=4775223
Score = 129 bits (142), Expect = 7e-25
Identities = 837/1328 (63%), Gaps = 41/1328 (3%)
Strand=Plus/Minus
Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGG 118201
|||||||| || ||||| || ||| ||| | ||| ||||| || | ||||| ||
Sbjct 4664917 TTGACAACCTGGAATTCACCGGCCAGGACGCGGCG-AGAGTAGATGTTCGATGTGTAAGG 4664859
Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCATGGGTGCCA 118260
||| |||||||| ||| ||| |||| | | || || ||||| || ||||||||||| |
Sbjct 4664858 CTCGAAGCACTCGTTGAAACC-AAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGA 4664800
Query 118261 TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGT 118320
||| || ||| |||| ||| | | ||| |||| || ||||||||
Sbjct 4664799 CGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCC 4664740
Query 118321 AGTTGAGCTTTG----TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376
|| || | || ||| | |||||| || ||||||||||||| || || ||
Sbjct 4664739 AGA-GATCGGTGGGAGTCTTG---TTCCACATGTCGTACTGGAGGATACCCTGAGAGGCA 4664684
Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 118433
|| |||| || |||||||| || || | | || || | ||| ||| ||
Sbjct 4664683 GGGCTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATCGAG---GCA 4664627
Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 118493
|||||| || || || || || || || || | || | |||||||||| |
Sbjct 4664626 GTGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGG 4664567
Query 118494 GAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553
|| || || | | ||| | || |||| || ||||| | |||||| | ||
Sbjct 4664566 GAGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCA 4664507
Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTA 118610
|| ||||| || | ||| || ||| | ||| ||| ||| || || || |
Sbjct 4664506 ATGGGGCGGTGACGCATGTTGCTCTTTCTAGC---CTCAGGCACCGGGTAGTGGTTGATG 4664450
Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 118670
||||| | | | || | || || | |||| |||| || || ||||| | | |
Sbjct 4664449 TCGATGATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAG 4664390
Query 118671 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 118730
|| || | | |||| | | || | | ||||| || | || |||| || ||
Sbjct 4664389 TCGTAAATACCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAG 4664330
Query 118731 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA 118790
|| | | ||||| |||||||||| | || || ||| | ||| || || |
Sbjct 4664329 ACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGA 4664270
Query 118791 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 118850
|||||||| | ||||| || || ||| ||| || |||||||| | |||| |
Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAG 4664210
Query 118851 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCAC 118909
|| | || ||||| ||| | || ||||||||| | ||| | | || || | || ||
Sbjct 4664209 GGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-AC 4664151
Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969
||| || | | || ||||| | |||||||| |||||| || || ||||| || ||
Sbjct 4664150 AGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCC 4664091
Query 118970 ---CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCAC 119025
|||| |||| || || || || || |||| || | ||| | ||| ||
Sbjct 4664090 ATACACG---TCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGT 4664035
Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085
|| ||| || ||||||||||| ||||| || |||||||| || |||| || || ||
Sbjct 4664034 TCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCG 4663975
Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145
||| |||| || | || || || || | || | || | | ||| ||||
Sbjct 4663974 CGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGT 4663915
Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 119202
||||||| || ||||| | || | | ||| || ||| |||||| || |
Sbjct 4663914 GCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGT 4663855
Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262
| | |||||| ||| | || || ||||| ||||| | ||||| | ||| || |
Sbjct 4663854 AGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGG 4663795
Query 119263 TCCCCCGAATACGAGACT--TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 119320
| || ||| | || |||| | || ||||| || | ||| || || ||
Sbjct 4663794 TACCGGCAAT--GTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCC 4663737
Query 119321 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 119380
|| ||| ||||| ||||| | |||| || ||||||| || ||||| |||
Sbjct 4663736 AGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTC 4663677
Query 119381 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAA 119440
|||| | ||||||||||||| | || || ||| |||| || || ||||||||
Sbjct 4663676 CTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGTTCCGGCGTTGAA 4663617
Query 119441 GAGAGTTG 119448
|||| ||
Sbjct 4663616 CAGAGCTG 4663609
>seq6
Length=2952248
Score = 123 bits (136), Expect = 3e-23
Identities = 303/453 (67%), Gaps = 10/453 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| ||||| ||||||||||||||||| ||||| |||| | ||| ||||||||
Sbjct 1057041 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATG 1057100
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| || || ||||| | | ||| | | | || | |||| || || ||
Sbjct 1057101 AAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTG-CCAAGAGCCACCAGCAGGCG 1057159
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||| ||||||| |||| | || |||||| || | |||
Sbjct 1057160 GTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCGAC 1057219
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| ||||| ||| || |||| ||||||| || |||||||| || | || |
Sbjct 1057220 GGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCTC 1057279
Query 129967 AATGGTCTCCGTGCCAGG--TCTA-TTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACT 130022
| || ||| | || || || | ||| | || | ||| || |||||| |
Sbjct 1057280 GACGGCCTCAGGGCTGGGCTTCGACTTG----ATGTGCGAGAACAGCAGGCAGGCAAAGT 1057335
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| | |||||||||||||||||||| || ||||||||| || || |||||||
Sbjct 1057336 CGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGA 1057395
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
|||| |||||||| | |||||| || | || ||||| ||||||||| ||||| |
Sbjct 1057396 GACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGA 1057455
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
| ||||| |||| |||||| ||| ||||
Sbjct 1057456 CGGCGGCGAAGGCAATCAGACGCGAAGCGAAGG 1057488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434975817240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |