Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq6 123 3e-23 >seq4 Length=4775223 Score = 129 bits (142), Expect = 7e-25 Identities = 837/1328 (63%), Gaps = 41/1328 (3%) Strand=Plus/Minus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGG 118201 |||||||| || ||||| || ||| ||| | ||| ||||| || | ||||| || Sbjct 4664917 TTGACAACCTGGAATTCACCGGCCAGGACGCGGCG-AGAGTAGATGTTCGATGTGTAAGG 4664859 Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCATGGGTGCCA 118260 ||| |||||||| ||| ||| |||| | | || || ||||| || ||||||||||| | Sbjct 4664858 CTCGAAGCACTCGTTGAAACC-AAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGA 4664800 Query 118261 TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGT 118320 ||| || ||| |||| ||| | | ||| |||| || |||||||| Sbjct 4664799 CGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCC 4664740 Query 118321 AGTTGAGCTTTG----TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || || | || ||| | |||||| || ||||||||||||| || || || Sbjct 4664739 AGA-GATCGGTGGGAGTCTTG---TTCCACATGTCGTACTGGAGGATACCCTGAGAGGCA 4664684 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 118433 || |||| || |||||||| || || | | || || | ||| ||| || Sbjct 4664683 GGGCTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATCGAG---GCA 4664627 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 118493 |||||| || || || || || || || || | || | |||||||||| | Sbjct 4664626 GTGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGG 4664567 Query 118494 GAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 || || || | | ||| | || |||| || ||||| | |||||| | || Sbjct 4664566 GAGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCA 4664507 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTA 118610 || ||||| || | ||| || ||| | ||| ||| ||| || || || | Sbjct 4664506 ATGGGGCGGTGACGCATGTTGCTCTTTCTAGC---CTCAGGCACCGGGTAGTGGTTGATG 4664450 Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 118670 ||||| | | | || | || || | |||| |||| || || ||||| | | | Sbjct 4664449 TCGATGATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAG 4664390 Query 118671 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 118730 || || | | |||| | | || | | ||||| || | || |||| || || Sbjct 4664389 TCGTAAATACCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAG 4664330 Query 118731 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA 118790 || | | ||||| |||||||||| | || || ||| | ||| || || | Sbjct 4664329 ACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGA 4664270 Query 118791 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 118850 |||||||| | ||||| || || ||| ||| || |||||||| | |||| | Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAG 4664210 Query 118851 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCAC 118909 || | || ||||| ||| | || ||||||||| | ||| | | || || | || || Sbjct 4664209 GGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-AC 4664151 Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969 ||| || | | || ||||| | |||||||| |||||| || || ||||| || || Sbjct 4664150 AGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCC 4664091 Query 118970 ---CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCAC 119025 |||| |||| || || || || || |||| || | ||| | ||| || Sbjct 4664090 ATACACG---TCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGT 4664035 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 || ||| || ||||||||||| ||||| || |||||||| || |||| || || || Sbjct 4664034 TCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCG 4663975 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 ||| |||| || | || || || || | || | || | | ||| |||| Sbjct 4663974 CGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGT 4663915 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 119202 ||||||| || ||||| | || | | ||| || ||| |||||| || | Sbjct 4663914 GCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGT 4663855 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262 | | |||||| ||| | || || ||||| ||||| | ||||| | ||| || | Sbjct 4663854 AGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGG 4663795 Query 119263 TCCCCCGAATACGAGACT--TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 119320 | || ||| | || |||| | || ||||| || | ||| || || || Sbjct 4663794 TACCGGCAAT--GTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCC 4663737 Query 119321 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 119380 || ||| ||||| ||||| | |||| || ||||||| || ||||| ||| Sbjct 4663736 AGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTC 4663677 Query 119381 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAA 119440 |||| | ||||||||||||| | || || ||| |||| || || |||||||| Sbjct 4663676 CTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGTTCCGGCGTTGAA 4663617 Query 119441 GAGAGTTG 119448 |||| || Sbjct 4663616 CAGAGCTG 4663609 >seq6 Length=2952248 Score = 123 bits (136), Expect = 3e-23 Identities = 303/453 (67%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| ||||| |||| | ||| |||||||| Sbjct 1057041 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATG 1057100 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | ||| | | | || | |||| || || || Sbjct 1057101 AAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTG-CCAAGAGCCACCAGCAGGCG 1057159 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| |||| | || |||||| || | ||| Sbjct 1057160 GTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCGAC 1057219 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || ||||| ||| || |||| ||||||| || |||||||| || | || | Sbjct 1057220 GGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCGGTAATAATCTTCTC 1057279 Query 129967 AATGGTCTCCGTGCCAGG--TCTA-TTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACT 130022 | || ||| | || || || | ||| | || | ||| || |||||| | Sbjct 1057280 GACGGCCTCAGGGCTGGGCTTCGACTTG----ATGTGCGAGAACAGCAGGCAGGCAAAGT 1057335 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | |||||||||||||||||||| || ||||||||| || || ||||||| Sbjct 1057336 CGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGA 1057395 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| |||||||| | |||||| || | || ||||| ||||||||| ||||| | Sbjct 1057396 GACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAGATACCCTCGA 1057455 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 | ||||| |||| |||||| ||| |||| Sbjct 1057456 CGGCGGCGAAGGCAATCAGACGCGAAGCGAAGG 1057488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434975817240