Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-28 seq6 105 8e-18 >seq4 Length=4775223 Score = 140 bits (154), Expect = 4e-28 Identities = 261/373 (70%), Gaps = 13/373 (3%) Strand=Plus/Plus Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 |||| |||||||| |||||||| ||| | | ||||| || | || ||||| | Sbjct 4663897 TCTACCTTGAGCCGTGGCACGCCGATGTGTTCAGTTTCCTCGACCTTCGCAAGAACCACG 4663956 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 | | ||||| | || || || || |||| ||||||||||||||| || || |||| Sbjct 4663957 GAAAGGAGGAAGTCCGCGCGCGTGACCTGTTCTACGCTCTCTGGATTCCCGACCTGTTCA 4664016 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGT 104794 ||||| | || ||| ||| |||| |||| | ||| | || || || || || || ||| Sbjct 4664017 TGAAGCGTGTCGAGCAGAACGGCACTTGGACCCTCATGTGCCCCAACGAATGC-CCGGGT 4664075 Query 104795 CTCTCCGATGCCGTG---GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAA 104851 || | || |||| || |||||||| || || || ||| |||||||| | || Sbjct 4664076 CTGGCAGA---CGTGTATGGCGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAG 4664132 Query 104852 GGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTC 104909 || || ||| | | ||| || || | || || | ||||| | ||||||||| || ||| Sbjct 4664133 GGCCGTGGCCGC-GAGACTGT-CCGGGCGCAGAAGCTGTGGTACGCTATTCTCGAGGCTC 4664190 Query 104910 AAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATC 104969 || ||||||||| | || | |||| | ||||| ||| ||| |||| ||||| || | Sbjct 4664191 AAGTCGAGACTGGCAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACC 4664250 Query 104970 AAAAGAAT-TTGG 104981 | |||||| |||| Sbjct 4664251 AGAAGAATCTTGG 4664263 >seq6 Length=2952248 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTC 94790 |||||||| || || | ||||| || || |||||| | ||| | || |||| | Sbjct 1057552 ACAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGGATCTGCGACAAGAAC 1057493 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | |||| ||| ||| || | || || || || ||||||||||||||| || Sbjct 1057492 TC-TACCTTCGCTTCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGG 1057434 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || ||| | || | |||||||||||||| ||||||||||| || || |||||| Sbjct 1057433 CTCTTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTC 1057374 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| ||||| |||||||||||| | ||| || ||||| Sbjct 1057373 GAACGAGCTCATCTCCCGTGACGAGGGAATGCACACCGACTTTGC 1057329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260588567960