Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 109 2e-18 >seq3 Length=5700105 Score = 109 bits (120), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 1597961 CATACCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1598020 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| || || Sbjct 1598021 CGAGAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGG 1598080 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || || || || |||||||| || ||| || || || || || | ||| || | | Sbjct 1598081 GGGGATACCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCCGACGACT 1598139 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| | || | ||||| ||||| || || || || || |||||||| Sbjct 1598140 CAACTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 105 bits (116), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || ||||| ||||||| ||| || |||| ||||||||||| ||||| || || Sbjct 4412462 CGGGGGACACCGAGTGTAACGTTC---TTCGATGAGACACCAGCAAAATGGAAGGTGTTC 4412518 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || |||| ||||||||||| ||||| || |||| || || ||||||||| Sbjct 4412519 AGAGTCATCTGCGTAGCAGGCTCACCAATCGACTGTGCGGCAAGGACACCGACCATTTCT 4412578 Query 377578 CCAGGATTGACAATAGC 377594 |||||| |||| || || Sbjct 4412579 CCAGGACTGACGATGGC 4412595 Score = 98.7 bits (108), Expect = 3e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | || || || ||||| || ||||| || || || || Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || || || ||||| || || ||||| ||||| || || || Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || ||| || || || || || | || || | ||| || Sbjct 1597857 ATACCCTCCTTGTCCTGGATCTT-GCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 91.5 bits (100), Expect = 4e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||| || || || || || || Sbjct 1598189 CATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 1598248 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || |||||||| || Sbjct 1598249 GGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGG 1598308 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || || || || || | || ||||| || || | ||||| | || Sbjct 1598309 AGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTC 1598368 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || || || | ||||| ||||| | ||| Sbjct 1598369 GACCTCCAGGGTGATGGTCTTGCCGGTCACTGT 1598401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253836988287