Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 203 4e-47 seq1 87.8 2e-12 >seq4 Length=4775223 Score = 203 bits (224), Expect = 4e-47 Identities = 438/648 (68%), Gaps = 8/648 (1%) Strand=Plus/Plus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 ||||||||||| || || | || ||| || | |||||||| | | |||||| Sbjct 4663614 CTGTTCAACGCCGGAACTCCCAAGCCGCAGCTGGCATCTTGCTTCCTCATCGACATGAAG 4663673 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || ||| ||||| ||||||||||| ||||||||| || ||| ||||| ||| Sbjct 4663674 GAGGACAGCATCGAGGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCTAAGACC 4663733 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | || || |||||| || || || | || ||||||| | ||||| || | Sbjct 4663734 GCTGGAGGCATCGGTCTCAACG--TCCACCGCATCCGTGCCACCGGCAGCTACATTGCCG 4663791 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || |||||| | | |||| | | || ||||||||||||| ||||||||| || | Sbjct 4663792 GTACCAACGGCACCAGCAATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTGCAC 4663851 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | ||||| ||||||| ||| |||||| ||| | || ||||||||||| ||||||| Sbjct 4663852 GCTACGTTGACCAGGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGAGCCGT 4663911 Query 53592 GGCACGCCGACATTATGGAGTTT-CTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||||| | | ||||| ||||| || || ||| || || | || || | Sbjct 4663912 GGCACGCCGA-TGTGTTCAGTTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGAAGTC 4663970 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||| ||||||||||| ||| ||||| |||||||| ||||| |||||| | || || Sbjct 4663971 CGCGCGCGTGACCTGTTCTAC-GCTCTCTGGATTCCCGACCTGTTCATGAAGCGTGTCGA 4664029 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | || ||| ||| ||| |||||||| ||||| ||||| || || | || || Sbjct 4664030 GCAGAACGGCACTTGGACCCTCATGTGCCCCAACGAATGCCCGGGTCTGGCAGACGTGTA 4664089 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829 || |||||||| | | | || | ||||| ||||||| | ||| Sbjct 4664090 TGGCGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGCCGTGGCCGCGAGAC 4664149 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| ||||| || | ||| | || || ||| || || || ||||| || | || Sbjct 4664150 TGTCCGGGCGCAGAAGCTGTGGTACGCTATTCTCGAGGCTCAAGTCGAGACTGGCAACCC 4664209 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 | ||||| |||||||| |||| ||||||||||||||||| Sbjct 4664210 CTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAA 4664257 >seq1 Length=6723813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||| |||||||||||| ||| |||||||| || ||||| | || | |||||| | Sbjct 4133593 GTGTAAATGTAACGAGCGCTGGCAGCATCATTACCACCCTGGATGCGAGAACCGAAGTTG 4133534 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || ||||||| |||||| | |||||||| || |||||||| || || | | || Sbjct 4133533 CCGCTGGGCTCCAGGAGGTTGATGTTGTTGGAACCGACAAAGTTCTGTGCGAGGCCAACG 4133474 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC-ACGTAGCC 117483 ||||| || ||| || || |||| || |||| ||| || ||| | || Sbjct 4133473 ATCGTTTGCTGAAGGGAGGCATCGCCATACGCGTAGTTCGTC-AATCCTCCTACGAAACC 4133415 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 || || | ||||||||||| | |||||| |||||| || | ||| | || Sbjct 4133414 TGCGAGTTCGTTGACCTTCATGTCCCTTTTAAGGTTCCTCTTGAAACAAGTATACAGGAC 4133355 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| ||||| | ||| || Sbjct 4133354 TTTGCGTTGACCGGGCTTGAAACCGTC 4133328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || |||||||||||||| |||||||| || | || || | || | Sbjct 4133746 CCCGTGCCGATACCATCTGCACCGTTGACAAGAATCATTGGAAGGATTGGCACATACATG 4133687 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCC--ATCACGTATTTCAA--AACGGAATTGTCAGC 151991 |||||| | | | | || |||||| |||| | || | | ||| | ||| || Sbjct 4133686 GTCGGCTCGATCGGCTTTCCATCATCCTGATCATG---CTCGAGGAGCGG-CTCGTCCGC 4133631 Query 151992 CGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 | || ||| || || |||| |||||| || | |||| | ||||| || | |||||| Sbjct 4133630 CACATGGAAGATGCGGCGAGCGATAGGAGACAGTCTCGTGTAAATGTAACGAGCGCTGGC 4133571 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| || ||||| | || | || || | || |||||| |||||||||| Sbjct 4133570 AGCATCATTACCACCCTGGATGCGAGAACCGAAGTTGCCGCTGGGCTCCAGGAGGTTGAT 4133511 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGC 152138 |||||||| || || || ||||| || Sbjct 4133510 GTTGTTGGAACCGACAAAGTTCTGTGC 4133484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215801634200