Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq4 159 4e-34 seq5 131 2e-25 seq2 116 4e-21 seq1 91.5 2e-13 >seq3 Length=5700105 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || | || |||||||| Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| || ||||||||||||||||| || || || |||||| Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || |||||||| || ||||| | ||| || || | ||||| || Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || ||||||| || ||||| Sbjct 1598011 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCCGTGGTGG 1597965 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || || ||||| || || Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||| || || |||||||||||||| || || || |||||| Sbjct 1597903 GACACCATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1597844 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||||||||| || ||||||| ||| || || | ||||| || Sbjct 1597843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAAC 1597784 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || || || | || | ||||| || ||||| || Sbjct 1597783 ATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGCCA 1597734 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| ||| | ||| | ||| | ||| | Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| |||||||| || |||||||| || || || || || ||| Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | |||||||| | ||||| || |||| ||||| |||||| || Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 1598216 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 1598215 CTCGTCCTCCGCCTTCGTGGTGG 1598193 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | || ||||| Sbjct 1598679 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGAGC 1598620 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || |||||||| || ||||||||||| || || ||||| ||| Sbjct 1598619 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCAAG 1598560 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| |||||| | | || || || |||| ||||| || || ||||| Sbjct 1598559 CAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTTCAC 1598500 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 1598499 CTCGTCCTCCGCCTGCGCGGTGG 1598477 >seq4 Length=4775223 Score = 159 bits (176), Expect = 4e-34 Identities = 604/934 (65%), Gaps = 23/934 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| ||| | ||| |||| || || || ||| ||||||||| || || Sbjct 4664717 CCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGGCTACCCTGGAACGTCTCATAAGG 4664658 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || | |||||| ||||| ||| | | ||||| || || |||||| ||| || Sbjct 4664657 ACCGTGGAGCTTGGCAAGCTCGATCGAGGCAGTGAGGGCAGCATGGTAAATGGTCTCGAA 4664598 Query 80661 GACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 || |||| | | || |||| ||| |||||| | || || | || || Sbjct 4664597 GATCTGGATGTTGA-GCTGCTTGGCCTCGGGGGAGTCGAAAGGCATGCGGAGAGCCAGGA 4664539 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | | ||||| || || | || || | || || |||||||| ||| |||| | || | Sbjct 4664538 AGGCATCAGCAAGACCATTGACACCCACCGCAATGGGGCGGTGACGCATGTT-GCTCTTT 4664480 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | ||||| || | ||||| ||| | ||||||| ||||| ||| || Sbjct 4664479 CTAGCCTCAGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGTTCTTCACAAGC 4664420 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCG--AAT-TGGTTC---CCCTTCACAAAT 80892 ||| | || || || || || || | |||||| ||| |||| | | ||| || Sbjct 4664419 ACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAAATACCGTTCTCGACGTCCACGAAG 4664360 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | |||||| |||||| |||| ||||| ||||| || || || | | || ||||| Sbjct 4664359 GTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCG 4664300 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||||| || ||| | ||||| ||| || || || || |||||||| |||| Sbjct 4664299 ACGATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTTG 4664240 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| ||||||||| ||||| | ||| | || |||||||| || | || ||| Sbjct 4664239 CGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGA 4664180 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 || |||| ||| | || ||||| ||| || |||| ||| || | | ||| Sbjct 4664179 ATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCGCGGCCACGGCCCTCCTTCTCGTAC 4664120 Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 | |||| | ||||||| | || | | || | || | ||||| ||||| Sbjct 4664119 TGCTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTG 4664060 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGG 81249 |||||||| ||| ||| ||| |||| ||| ||| ||||||||| ||| || Sbjct 4664059 GGGCACATGAGGGTCCA---AGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGA 4664003 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 |||||||| ||| ||||||||| || ||| | ||||| | || ||||| ||| Sbjct 4664002 ATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGA 4663943 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369 | ||||| || | | || || ||||| ||||| || || | ||| | | ||| Sbjct 4663942 AGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCC 4663883 Query 81370 TTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 ||| | || ||||||| ||||| || ||||| ||| | || || | ||| Sbjct 4663882 GGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATG 4663823 Query 81427 GGGATGATACCATCTGACTG--ACCGTTCGTACC 81458 || || | ||||| || ||| ||||| ||||| Sbjct 4663822 GGAATCAGACCAT-TG-CTGGTGCCGTTGGTACC 4663791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| |||||| || | |||| Sbjct 4665232 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGGCCGAGCTTCCATCCAGCGAAGTGC 4665173 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||||| | | ||| | | || |||| || |||| |||||| || ||||| ||||| Sbjct 4665172 ATAGAGGTAATCTTGCCCATCGTAGGGTCCTTCATGTGGATGTTGAGGGACTGCGACTGG 4665113 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||||| || ||||| || || ||||| Sbjct 4665112 TCAATGAAGGCACCACGGTCGGCAGCCAT 4665084 >seq5 Length=4159236 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || |||||||| ||||| || | ||| Sbjct 355236 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 355177 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| || || |||||||||||||| ||||| || ||||||||||| || Sbjct 355176 CGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 355117 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||||| || ||||| | ||||| || |||| || Sbjct 355116 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 355057 Query 27594 GG 27595 || Sbjct 355056 GG 355055 >seq2 Length=6116231 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || ||||| ||||| |||||| Sbjct 4767813 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 4767872 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| |||||||| | ||||| || |||| ||||| ||||| ||||| || || | Sbjct 4767873 GATGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 4767932 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 4767933 CGCCTGCGTGGTGG 4767946 >seq1 Length=6723813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 ||||||||||| || ||||| ||||||| || ||||| || | || | Sbjct 4133307 CGGTCCATTCCCTCGGTCATCGACGGTTTCAAGCCCGGTCAACGCAAAGTCCTGTATACT 4133366 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 || |||||| |||||| || ||||||||||| | || | || | ||| | | Sbjct 4133367 TGTTTCAAGAGGAACCTTAAAAGGGACATGAAGGTCAACGAACTCGCAGGTTTCGTAGGA 4133426 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 | ||| ||| | ||||| || || || ||| || || || ||| || Sbjct 4133427 GGATTGACGAACTACGCGTATGGCGATGCCTCCCTTCAGCAAACGATCGTTGGCCTCGCA 4133486 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 ||||||||||||||| | || ||| | ||| | || ||||| || | || || | Sbjct 4133487 CAGAACTTTGTCGGTTCCAACAACATCAACCTCCTGGAGCCCAGCGGCAACTTCGGTTCT 4133546 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCT 32262 || || ||||| || |||||||| ||| | |||||||| | ||| | || | ||| Sbjct 4133547 CGCATCCAGGGTGGTAATGATGCTGCCAGCGCTCGTTACATTTACACGAGACTGTCTCCT 4133606 Query 32263 -TCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGA 32321 ||| | ||| || ||| | | ||||||| || | ||| || | || ||||| Sbjct 4133607 ATCG-CTCGCCGCATCTTCCATGTGGCGGACGAGCCGCTCCTCGAGCATGATCAGGATGA 4133665 Query 32322 CGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGG 32381 || ||| | |||||||| | || || | ||||| ||||| | || ||||| Sbjct 4133666 TGGAAAGCCGATCGAGCCGACCATGTATGTGCCAATCCTTCCAATGATTCTTGTCAACGG 4133725 Query 32382 TGCAGAAGGCATCGGAACGGGGTTCAGTT 32410 |||||| || ||||| ||||| | |||| Sbjct 4133726 TGCAGATGGTATCGGCACGGGTTGGAGTT 4133754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310193262480