Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 3e-36
seq4 159 4e-34
seq5 131 2e-25
seq2 116 4e-21
seq1 91.5 2e-13
>seq3
Length=5700105
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| ||||||||||| || || | || ||||||||
Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| || ||||||||||||||||| || || || ||||||
Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || || |||||||| || ||||| | ||| || || | ||||| ||
Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| || || || ||||||| || |||||
Sbjct 1598011 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCCGTGGTGG 1597965
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || |||||||| || || || ||||| || ||
Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || ||||| || || |||||||||||||| || || || ||||||
Sbjct 1597903 GACACCATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1597844
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||||||||| || ||||||| ||| || || | ||||| ||
Sbjct 1597843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAAC 1597784
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || ||||| || || || || | || | ||||| || ||||| ||
Sbjct 1597783 ATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGCCA 1597734
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| ||| | ||| | ||| | ||| |
Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || ||||||||||| |||||||| || |||||||| || || || || || |||
Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | |||||||| | ||||| || |||| ||||| |||||| ||
Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 1598216
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || ||||| |||||
Sbjct 1598215 CTCGTCCTCCGCCTTCGTGGTGG 1598193
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || |||||||| ||||| || | ||| | || |||||
Sbjct 1598679 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGAGC 1598620
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||| ||||| || |||||||| || ||||||||||| || || ||||| |||
Sbjct 1598619 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCAAG 1598560
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||||| |||||| | | || || || |||| ||||| || || |||||
Sbjct 1598559 CAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTTCAC 1598500
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || ||||||||
Sbjct 1598499 CTCGTCCTCCGCCTGCGCGGTGG 1598477
>seq4
Length=4775223
Score = 159 bits (176), Expect = 4e-34
Identities = 604/934 (65%), Gaps = 23/934 (2%)
Strand=Plus/Minus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||||| ||| | ||| |||| || || || ||| ||||||||| || ||
Sbjct 4664717 CCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGGCTACCCTGGAACGTCTCATAAGG 4664658
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
|| | |||||| ||||| ||| | | ||||| || || |||||| ||| ||
Sbjct 4664657 ACCGTGGAGCTTGGCAAGCTCGATCGAGGCAGTGAGGGCAGCATGGTAAATGGTCTCGAA 4664598
Query 80661 GACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719
|| |||| | | || |||| ||| |||||| | || || | || ||
Sbjct 4664597 GATCTGGATGTTGA-GCTGCTTGGCCTCGGGGGAGTCGAAAGGCATGCGGAGAGCCAGGA 4664539
Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779
| | ||||| || || | || || | || || |||||||| ||| |||| | || |
Sbjct 4664538 AGGCATCAGCAAGACCATTGACACCCACCGCAATGGGGCGGTGACGCATGTT-GCTCTTT 4664480
Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838
| ||||| || | ||||| ||| | ||||||| ||||| ||| ||
Sbjct 4664479 CTAGCCTCAGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGTTCTTCACAAGC 4664420
Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCG--AAT-TGGTTC---CCCTTCACAAAT 80892
||| | || || || || || || | |||||| ||| |||| | | ||| ||
Sbjct 4664419 ACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAAATACCGTTCTCGACGTCCACGAAG 4664360
Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952
| |||||| |||||| |||| ||||| ||||| || || || | | || |||||
Sbjct 4664359 GTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCG 4664300
Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012
||||| || ||| | ||||| ||| || || || || |||||||| ||||
Sbjct 4664299 ACGATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTTG 4664240
Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072
|||||| ||||||||| ||||| | ||| | || |||||||| || | || |||
Sbjct 4664239 CGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGA 4664180
Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132
|| |||| ||| | || ||||| ||| || |||| ||| || | | |||
Sbjct 4664179 ATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCGCGGCCACGGCCCTCCTTCTCGTAC 4664120
Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192
| |||| | ||||||| | || | | || | || | ||||| |||||
Sbjct 4664119 TGCTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTG 4664060
Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGG 81249
|||||||| ||| ||| ||| |||| ||| ||| ||||||||| ||| ||
Sbjct 4664059 GGGCACATGAGGGTCCA---AGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGA 4664003
Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309
|||||||| ||| ||||||||| || ||| | ||||| | || ||||| |||
Sbjct 4664002 ATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGA 4663943
Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369
| ||||| || | | || || ||||| ||||| || || | ||| | | |||
Sbjct 4663942 AGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCC 4663883
Query 81370 TTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426
||| | || ||||||| ||||| || ||||| ||| | || || | |||
Sbjct 4663882 GGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATG 4663823
Query 81427 GGGATGATACCATCTGACTG--ACCGTTCGTACC 81458
|| || | ||||| || ||| ||||| |||||
Sbjct 4663822 GGAATCAGACCAT-TG-CTGGTGCCGTTGGTACC 4663791
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| |||||| || | ||||
Sbjct 4665232 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGGCCGAGCTTCCATCCAGCGAAGTGC 4665173
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
||||| | | ||| | | || |||| || |||| |||||| || ||||| |||||
Sbjct 4665172 ATAGAGGTAATCTTGCCCATCGTAGGGTCCTTCATGTGGATGTTGAGGGACTGCGACTGG 4665113
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
||||| || ||||| || || |||||
Sbjct 4665112 TCAATGAAGGCACCACGGTCGGCAGCCAT 4665084
>seq5
Length=4159236
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || |||||||| || || |||||||| ||||| || | |||
Sbjct 355236 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 355177
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| || || |||||||||||||| ||||| || ||||||||||| ||
Sbjct 355176 CGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 355117
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || ||||| |||||||||| || ||||| | ||||| || |||| ||
Sbjct 355116 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 355057
Query 27594 GG 27595
||
Sbjct 355056 GG 355055
>seq2
Length=6116231
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| || || || |||||||||||||| || || ||||| ||||| ||||||
Sbjct 4767813 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 4767872
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| |||||||| | ||||| || |||| ||||| ||||| ||||| || || |
Sbjct 4767873 GATGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 4767932
Query 27619 CGTCTTCGCGGTGG 27632
|| || || |||||
Sbjct 4767933 CGCCTGCGTGGTGG 4767946
>seq1
Length=6723813
Score = 91.5 bits (100), Expect = 2e-13
Identities = 291/449 (65%), Gaps = 2/449 (0%)
Strand=Plus/Plus
Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022
||||||||||| || ||||| ||||||| || ||||| || | || |
Sbjct 4133307 CGGTCCATTCCCTCGGTCATCGACGGTTTCAAGCCCGGTCAACGCAAAGTCCTGTATACT 4133366
Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082
|| |||||| |||||| || ||||||||||| | || | || | ||| | |
Sbjct 4133367 TGTTTCAAGAGGAACCTTAAAAGGGACATGAAGGTCAACGAACTCGCAGGTTTCGTAGGA 4133426
Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142
| ||| ||| | ||||| || || || ||| || || || ||| ||
Sbjct 4133427 GGATTGACGAACTACGCGTATGGCGATGCCTCCCTTCAGCAAACGATCGTTGGCCTCGCA 4133486
Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202
||||||||||||||| | || ||| | ||| | || ||||| || | || || |
Sbjct 4133487 CAGAACTTTGTCGGTTCCAACAACATCAACCTCCTGGAGCCCAGCGGCAACTTCGGTTCT 4133546
Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCT 32262
|| || ||||| || |||||||| ||| | |||||||| | ||| | || | |||
Sbjct 4133547 CGCATCCAGGGTGGTAATGATGCTGCCAGCGCTCGTTACATTTACACGAGACTGTCTCCT 4133606
Query 32263 -TCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGA 32321
||| | ||| || ||| | | ||||||| || | ||| || | || |||||
Sbjct 4133607 ATCG-CTCGCCGCATCTTCCATGTGGCGGACGAGCCGCTCCTCGAGCATGATCAGGATGA 4133665
Query 32322 CGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGG 32381
|| ||| | |||||||| | || || | ||||| ||||| | || |||||
Sbjct 4133666 TGGAAAGCCGATCGAGCCGACCATGTATGTGCCAATCCTTCCAATGATTCTTGTCAACGG 4133725
Query 32382 TGCAGAAGGCATCGGAACGGGGTTCAGTT 32410
|||||| || ||||| ||||| | ||||
Sbjct 4133726 TGCAGATGGTATCGGCACGGGTTGGAGTT 4133754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310193262480
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