Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 >seq3 Length=5700105 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||||||| |||||| || ||||| || || || || || || Sbjct 1597974 AGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGA 1598033 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || ||||| || || || | ||||| |||||||| || | |||||| Sbjct 1598034 CCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 1598093 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | || || || ||| ||||||| ||| Sbjct 1598094 TTGTC-CTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACTTCCAAGGT 1598152 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||| || || || |||||||| Sbjct 1598153 GATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||||||||||| || ||||| || || || || || || |||| || || || Sbjct 1598217 TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGC 1598276 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | ||||| || ||||| || | |||||||||||| |||||| Sbjct 1598277 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 1598335 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || |||||| |||||||| || || || || || || Sbjct 1597746 AGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGA 1597805 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| || || || | |||||| |||||||| || | |||||| Sbjct 1597806 CCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCC 1597865 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 1597866 TTGTCCTGGATCTT 1597879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729488762757