Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 >seq4 Length=4775223 Score = 131 bits (144), Expect = 2e-25 Identities = 211/295 (72%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||||||| ||| | ||||||| ||||| || |||||| || || ||| Sbjct 1682201 ACGTAGAATTGTGCA-AACATGTGGCAAGGGGGCAGGGCCATCTTCTTCAGGTCTGCCGG 1682259 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| |||| ||| | ||| | | ||||| || || ||||| ||||||| || Sbjct 1682260 ATTCCATGCGCTCATGATGATGCGGCGGTCATACGGCTTGTTCTTCAGCTTGTCGATGAC 1682319 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905 | || |||||| | || || |||| |||||| | |||||| || | |||||| | Sbjct 1682320 ATCGGCCAACTGGTCAACACCTTGGCCCGTATAGTCTGTCTTCGCATCCAC-ATACTCTG 1682378 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC---GAG 6962 | || ||||||| ||||||||| || || |||||||||| ||||||||| || | ||| Sbjct 1682379 CTCCGAAGTGTCGCCACTGGAAGCCATATACCGGGCCCAGGTCGCCCTCTTCGCGGTGAG 1682438 Query 6963 ATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | ||| ||| |||| || || || || || |||| ||||||||||||| Sbjct 1682439 ACAG--TCCCACGC-TGTCAAGGAACTCGCGCGATCCGTTTCCGTCCCAGATCTT 1682490 Score = 131 bits (144), Expect = 2e-25 Identities = 211/295 (72%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTC-- 34385 ||||||||||||| |||| || || || || || |||| ||| ||| | |||| Sbjct 1682490 AAGATCTGGGACGGAAACGGATCGCGCGAGTTCCTTGACA-GCGTGGGA--CTGTCTCAC 1682434 Query 34386 -GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 | || ||||||||| |||||||||| || || ||||||||| ||||||| || || ||| Sbjct 1682433 CGCGAAGAGGGCGACCTGGGCCCGGTATATGGCTTCCAGTGGCGACACTTCGGAGCAGAG 1682374 Query 34445 TATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 ||| | || |||||| | |||||| |||| || || | |||||| || | || || Sbjct 1682373 TAT-GTGGATGCGAAGACAGACTATACGGGCCAAGGTGTTGACCAGTTGGCCGATGTCAT 1682315 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||| ||||| || || ||||| | | ||| | ||| |||| ||||| ||| Sbjct 1682314 CGACAAGCTGAAGAACAAGCCGTATGACCGCCGCATCATCATGAGCGCATGGAATCCGGC 1682255 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617 || || |||||| || ||||| ||||||| | ||| ||||||||||| Sbjct 1682254 AGACCTGAAGAAGATGGCCCTGCCCCCTTGCCACATGTT-TGCACAATTCTACGT 1682201 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||||| ||| |||||||| | |||||| | | ||| |||| ||||| Sbjct 1681916 AGCTCCGGGAAGTCTCGTGGCTCTCGCTCCAGCTGCACCTTCAGCGCATCGACGTGGTCG 1681975 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||||| ||||| || |||| |||||| |||| ||| || || | ||| Sbjct 1681976 AGGTAGACGTGCGCGTCACCCATGGTATGCGTCAGCGTCCCGGGGGTCAGGTCACAGACG 1682035 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || | ||||| |||||| ||||| || ||||||||||| || || || | ||| Sbjct 1682036 TGCGCTAGCATGTGCGTGAGAAGAGCATACGACGCAATGTTGAAAGGGACGCCGAGACCC 1682095 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC 6720 ||||| | || || ||||| ||| ||||| |||| |||| Sbjct 1682096 ATGTCGCAAGACCGCTGATAAAGCAGGCAGTGCAGCACCCC 1682136 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||| |||| ||||| ||| ||||| || || | |||||||| | || || || ||| Sbjct 1682136 GGGGTGCTGCACTGCCTGCTTTATCAGCGGTCTTGCGACATGGGTCTCGGCGTCCCTTTC 1682077 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 |||||||| || ||||| |||||| ||||| | || || ||| | || || Sbjct 1682076 AACATTGCGTCGTATGCTCTTCTCACGCACATGCTAGCGCACGTCTGTGACCTGACCCCC 1682017 Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTC 34804 ||| |||| |||||| |||| || ||||| ||||||| ||||| |||| ||| Sbjct 1682016 GGGACGCTGACGCATACCATGGGTGACGCGCACGTCTACCTCGACCACGTCGATGCGCTG 1681957 Query 34805 CGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 | | |||||| | |||||||| ||| ||||| |||| Sbjct 1681956 AAGGTGCAGCTGGAGCGAGAGCCACGAGACTTCCCGGAGCT 1681916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262237504880