Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 167 5e-36 seq5 147 5e-30 seq4 107 4e-18 seq2 102 2e-16 >seq3 Length=5700105 Score = 167 bits (184), Expect = 5e-36 Identities = 151/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| ||||||| | ||| | ||||| Sbjct 1598492 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCC 1598551 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||||||||| || || || || ||||||| |||||||| ||| Sbjct 1598552 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCC 1598611 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 1598612 TGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 1598671 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 1598672 TTGCCGGTGA 1598681 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || || ||||| || |||| || || | ||||| Sbjct 1597752 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCATCC 1597811 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || || || || ||||| || || | || ||||||||| Sbjct 1597812 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 1597871 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| || ||| |||||||| ||||| ||| Sbjct 1597872 TGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGCGTGATGGTC 1597931 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1597932 TTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || |||| || || | || || Sbjct 1597980 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACCGTCC 1598039 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 1598040 TCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 1598099 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||| || || ||||| || | ||||| ||| Sbjct 1598100 TGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACTTCCAAGGTGATGGTC 1598159 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1598160 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| |||||| ||| || |||||||| || || | ||||| Sbjct 1598198 ACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 1598257 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| ||||| || || || ||||||| || Sbjct 1598258 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCC 1598317 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || || || ||||||||||||||| || ||||| || Sbjct 1598318 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCCAG 1598377 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| ||||| || || Sbjct 1598378 GGTGATGGTCTTGCCGGT 1598395 >seq5 Length=4159236 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 355176 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 355177 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 355235 >seq4 Length=4775223 Score = 107 bits (118), Expect = 4e-18 Identities = 194/281 (69%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| ||||| ||||||||||| | ||| | ||| || |||||| |||||||| Sbjct 4664263 CCAAGATTCTTCTGGTTGCTCTTGCGGTTGC-AGTGG--TCCTTGTACAACATGAAGGGG 4664207 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| |||||||| ||||||| | ||| |||| ||| || ||||||||| Sbjct 4664206 TTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTC 4664147 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | | || || |||||||||| | |||||| ||||||| ||| ||||| Sbjct 4664146 TCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATAC 4664087 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || || | ||||| || || |||||||| | ||| |||| |||| | || Sbjct 4664086 ACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCG 4664027 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || |||||||| ||||| | |||||| || ||||| Sbjct 4664026 ACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAA 4663986 >seq2 Length=6116231 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || |||||||| || |||| ||||| | ||||| Sbjct 4767931 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCC 4767872 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 4767871 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 4767813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151569302585