Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 140 8e-28 seq5 120 7e-22 >seq3 Length=5700105 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||||||| || || |||| ||||| |||| || || Sbjct 1598198 ACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 1598257 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || || || || ||||| || Sbjct 1598258 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCC 1598317 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| ||||||||||| |||| || || || | Sbjct 1598318 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCCAG 1598377 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 1598378 GGTGATGGTCTTGCCGGTCA 1598397 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| |||||||| | ||| || | ||||| Sbjct 1598492 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCC 1598551 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || || || || ||||| |||||||| || Sbjct 1598552 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCC 1598611 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || | || || || | ||||| ||| Sbjct 1598612 TGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 1598671 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 1598672 TTGCCGGT 1598679 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || || | ||||| || | | ||| | ||||| Sbjct 1597752 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCATCC 1597811 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || ||||| || || ||||| |||||||| Sbjct 1597812 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 1597871 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || | |||||| || | |||||| ||| Sbjct 1597872 TGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGCGTGATGGTC 1597931 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 1597932 TTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||||||||| || || |||| ||||| || | | ||| Sbjct 1597970 ACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGT 1598029 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || || ||||| Sbjct 1598030 GCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACC 1598089 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || |||||||| || || | || || || || Sbjct 1598090 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACTTCCAA 1598149 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 1598150 GGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 >seq5 Length=4159236 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || || | ||||| || |||||||| || |||||||| Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 355176 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| |||| || || || | ||||| ||||||||||| Sbjct 355177 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 355220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530756900126