Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 7e-16 >seq4 Length=4775223 Score = 98.7 bits (108), Expect = 7e-16 Identities = 250/377 (66%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || || ||||| || |||| || ||||| |||| || |||||| Sbjct 1682221 GTGGCAAGGGGGCAGGGCCATCTTCTTCAGGTCTGCCGGATTCCATGCGCTCATGATGAT 1682280 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 ||| | ||| | || |||||| | | ||| | | | | || ||| || || || Sbjct 1682281 GCGGCGGTCATACGGCTTGTTCTTCAGCTTGTCGATGACATCGGCCAACTGGTCAACACC 1682340 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 |||| |||||| | || ||| |||||||||||||| || | ||| ||||| Sbjct 1682341 TTGGCCCGTATAGTCTGTCTTCGCATCCACATACTCTGCTCCGAAGTGTCGCCACTGGAA 1682400 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-AGCCCCTC-TTGTCCAAA 27585 || || ||||| |||||||| |||||||| | ||| || || ||| | |||| | Sbjct 1682401 GCCATATACCGGGCCCAGGTCGCCCTCTTCGCGGTG--AGACAGTCCCACGCTGTCAAGG 1682458 Query 27586 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 27645 || || | || ||||| ||||||||||||||| || ||| || | ||| || Sbjct 1682459 AACTCGCGCGATCCGTTTCCGTCCCAGATCTTTATGCCAGCCTCTGACAATGGTTTAGAT 1682518 Query 27646 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 |||| || ||||||||| || || || | | || || | ||| || | | Sbjct 1682519 GAGGTGGTGCCAGCGACGAACCAGAGAAGTTCAGCAATAACTGCACGCAGAAATACGCGC 1682578 Query 27706 TTGGTCGTGAGGAGGGG 27722 || || ||||| ||||| Sbjct 1682579 TTCGTAGTGAGAAGGGG 1682595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | ||| ||||| |||||||| || ||||| || ||||||||||| ||||| Sbjct 1681934 GGCTCTCGCTCCAGCTGCACCTTCAGCGCATCGACGTGGTCGAGGTAGACGTGCGCGTCA 1681993 Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 |||| ||| || | || || | || || || | |||||| || | ||||| ||| Sbjct 1681994 CCCATGGTATGCGTCAGCGTCCCGGGGGTC-AGGTCACAGACGTGCGCTAGCATGTGCGT 1682052 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 ||| |||| || || ||||| || || || ||||| |||||||| | |||| ||| Sbjct 1682053 GAGAAGAGCATACGACGCAATGTTGAAAGGGACGCCGAGACCCATGTCGCAAGACCGCTG 1682112 Query 27297 GTAGAGC 27303 || ||| Sbjct 1682113 ATAAAGC 1682119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507069402299