Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq4 98.7 7e-16
>seq4
Length=4775223
Score = 98.7 bits (108), Expect = 7e-16
Identities = 250/377 (66%), Gaps = 4/377 (1%)
Strand=Plus/Plus
Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407
|||||| || || || ||||| || |||| || ||||| |||| || ||||||
Sbjct 1682221 GTGGCAAGGGGGCAGGGCCATCTTCTTCAGGTCTGCCGGATTCCATGCGCTCATGATGAT 1682280
Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467
||| | ||| | || |||||| | | ||| | | | | || ||| || || ||
Sbjct 1682281 GCGGCGGTCATACGGCTTGTTCTTCAGCTTGTCGATGACATCGGCCAACTGGTCAACACC 1682340
Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527
|||| |||||| | || ||| |||||||||||||| || | ||| |||||
Sbjct 1682341 TTGGCCCGTATAGTCTGTCTTCGCATCCACATACTCTGCTCCGAAGTGTCGCCACTGGAA 1682400
Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-AGCCCCTC-TTGTCCAAA 27585
|| || ||||| |||||||| |||||||| | ||| || || ||| | |||| |
Sbjct 1682401 GCCATATACCGGGCCCAGGTCGCCCTCTTCGCGGTG--AGACAGTCCCACGCTGTCAAGG 1682458
Query 27586 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 27645
|| || | || ||||| ||||||||||||||| || ||| || | ||| ||
Sbjct 1682459 AACTCGCGCGATCCGTTTCCGTCCCAGATCTTTATGCCAGCCTCTGACAATGGTTTAGAT 1682518
Query 27646 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705
|||| || ||||||||| || || || | | || || | ||| || | |
Sbjct 1682519 GAGGTGGTGCCAGCGACGAACCAGAGAAGTTCAGCAATAACTGCACGCAGAAATACGCGC 1682578
Query 27706 TTGGTCGTGAGGAGGGG 27722
|| || ||||| |||||
Sbjct 1682579 TTCGTAGTGAGAAGGGG 1682595
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177
||||| | ||| ||||| |||||||| || ||||| || ||||||||||| |||||
Sbjct 1681934 GGCTCTCGCTCCAGCTGCACCTTCAGCGCATCGACGTGGTCGAGGTAGACGTGCGCGTCA 1681993
Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236
|||| ||| || | || || | || || || | |||||| || | ||||| |||
Sbjct 1681994 CCCATGGTATGCGTCAGCGTCCCGGGGGTC-AGGTCACAGACGTGCGCTAGCATGTGCGT 1682052
Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296
||| |||| || || ||||| || || || ||||| |||||||| | |||| |||
Sbjct 1682053 GAGAAGAGCATACGACGCAATGTTGAAAGGGACGCCGAGACCCATGTCGCAAGACCGCTG 1682112
Query 27297 GTAGAGC 27303
|| |||
Sbjct 1682113 ATAAAGC 1682119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507069402299
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |