Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 9e-33
seq5 141 2e-28
seq2 102 2e-16
seq6 86.0 1e-11
>seq3
Length=5700105
Score = 156 bits (172), Expect = 9e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| ||||| |||| || | || || || || ||||||||||| |
Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| |||||||| || || || || || || || | ||| || ||||| ||
Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||| ||||| || ||| | ||||| ||||| |||| ||| ||
Sbjct 1597857 ATACCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | ||||| || || |||||||||||||| |
Sbjct 1598192 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1598251
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || ||||| ||||||| || || || || ||
Sbjct 1598252 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 1598311
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| | || || | ||||| ||||| || | |||||
Sbjct 1598312 AATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGAC 1598371
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || ||||| ||||| || ||||
Sbjct 1598372 CTCCAGGGTGATGGTCTTGCCGGTCA 1598397
Score = 145 bits (160), Expect = 2e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || ||||| || | ||| || || |||||||||||||| |
Sbjct 1597964 ACCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 1598023
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || || ||||||| || || ||||| ||
Sbjct 1598024 GAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1598083
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||||||||||||| || ||| ||||| || ||| | ||||| || ||||| | || |
Sbjct 1598084 GATACCCTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAA 1598142
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| | ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 1598143 CTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191
Score = 114 bits (126), Expect = 3e-20
Identities = 152/206 (74%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
|||||| |||||||| || || || || | || || || ||||||||||| || |
Sbjct 1598476 ACCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 1598535
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| || || || || || ||||| | ||| || || || |
Sbjct 1598536 CAAG-GTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAG 1598594
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
|||| || ||||| || |||||| ||||| || ||| | ||||| ||||| || | |||
Sbjct 1598595 GAATGCCTTCCTTATCCTGGATC-TTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCG 1598653
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || || ||||| ||||| || ||
Sbjct 1598654 ACCTCAAGGGTGATGGTCTTGCCGGT 1598679
>seq5
Length=4159236
Score = 141 bits (156), Expect = 2e-28
Identities = 141/180 (78%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||||||||| || || || ||||| ||||||
Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
| || || ||||| ||||| ||||||||||| |||||| ||||| || || | ||
Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 355175
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| |||||||| | ||||| || || ||||| ||||| ||||| | ||||| |||||
Sbjct 355176 GATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 355235
>seq2
Length=6116231
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || || || | ||| || || |||||||||||||| |
Sbjct 4767947 ACCACCACGCAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 4767888
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || || || ||||||| ||| || ||||| ||
Sbjct 4767887 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 4767828
Query 282992 AATACCCTCCTTGTCT 283007
|| ||||||||||||
Sbjct 4767827 GATGCCCTCCTTGTCT 4767812
>seq6
Length=2952248
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288
|||||||| || | |||||| | || || ||||| ||||| || || || | | |||
Sbjct 1057207 GGCATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTG 1057148
Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348
|| || || || |||| || ||| | | |||||||||| || |||||| |||
Sbjct 1057147 GCTCTTGGCAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATC 1057088
Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408
|| ||| | || || || ||||||||||| ||||| || | || || || | | | |||
Sbjct 1057087 TCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTACCAGAAGGCAGGT 1057028
Query 230409 GT 230410
||
Sbjct 1057027 GT 1057026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738811070966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |