Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 156 9e-33 seq5 141 2e-28 seq2 102 2e-16 seq6 86.0 1e-11 >seq3 Length=5700105 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||| || | || || || || ||||||||||| | Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || || || || | ||| || ||||| || Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||| ||||| || ||| | ||||| ||||| |||| ||| || Sbjct 1597857 ATACCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||||| || || |||||||||||||| | Sbjct 1598192 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1598251 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| ||||||| || || || || || Sbjct 1598252 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 1598311 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| | || || | ||||| ||||| || | ||||| Sbjct 1598312 AATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGAC 1598371 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| ||||| || |||| Sbjct 1598372 CTCCAGGGTGATGGTCTTGCCGGTCA 1598397 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | ||| || || |||||||||||||| | Sbjct 1597964 ACCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 1598023 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || || ||||||| || || ||||| || Sbjct 1598024 GAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1598083 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| || ||| ||||| || ||| | ||||| || ||||| | || | Sbjct 1598084 GATACCCTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAA 1598142 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1598143 CTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 114 bits (126), Expect = 3e-20 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| |||||||| || || || || | || || || ||||||||||| || | Sbjct 1598476 ACCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 1598535 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| || || || || || ||||| | ||| || || || | Sbjct 1598536 CAAG-GTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAG 1598594 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| || ||||| || |||||| ||||| || ||| | ||||| ||||| || | ||| Sbjct 1598595 GAATGCCTTCCTTATCCTGGATC-TTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCG 1598653 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || ||||| ||||| || || Sbjct 1598654 ACCTCAAGGGTGATGGTCTTGCCGGT 1598679 >seq5 Length=4159236 Score = 141 bits (156), Expect = 2e-28 Identities = 141/180 (78%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 | || || ||||| ||||| ||||||||||| |||||| ||||| || || | || Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 355175 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| |||||||| | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 355176 GATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 355235 >seq2 Length=6116231 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 4767947 ACCACCACGCAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 4767888 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || ||||||| ||| || ||||| || Sbjct 4767887 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 4767828 Query 282992 AATACCCTCCTTGTCT 283007 || |||||||||||| Sbjct 4767827 GATGCCCTCCTTGTCT 4767812 >seq6 Length=2952248 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288 |||||||| || | |||||| | || || ||||| ||||| || || || | | ||| Sbjct 1057207 GGCATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTG 1057148 Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348 || || || || |||| || ||| | | |||||||||| || |||||| ||| Sbjct 1057147 GCTCTTGGCAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATC 1057088 Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408 || ||| | || || || ||||||||||| ||||| || | || || || | | | ||| Sbjct 1057087 TCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTACCAGAAGGCAGGT 1057028 Query 230409 GT 230410 || Sbjct 1057027 GT 1057026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738811070966