Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 1e-25
seq5 111 1e-19
>seq3
Length=5700105
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| || |||||||| || | ||| ||| | || ||
Sbjct 1597754 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCATCCTC 1597813
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || || || || | ||||||||| || | || | ||| ||||| |||
Sbjct 1597814 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 1597873
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | |||||||||| ||||||||||| | ||| || |||||
Sbjct 1597874 GATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGCGTGATGGTCTT 1597933
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| ||||| || |||||
Sbjct 1597934 GCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 129 bits (142), Expect = 4e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||||||| || ||| |||||| ||||||||||| ||
Sbjct 1597961 CATACCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1598020
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| ||| ||| |||| ||||||||||| || || ||||||| |||||||| || |
Sbjct 1598021 CGAGAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGG 1598080
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | ||| ||||| ||| ||||| ||| | | | ||||| || | || ||
Sbjct 1598081 GGGGATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTC 1598140
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||| || || ||||| || ||||| ||||| |||||||| |||||
Sbjct 1598141 AACTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191
Score = 111 bits (122), Expect = 1e-19
Identities = 138/187 (74%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||||||||||| ||||||||||| |||| || || |||| ||
Sbjct 1598211 ACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCG 1598270
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| ||||||| ||||||||||| | ||| | || ||||| ||
Sbjct 1598271 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 1598330
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||| | ||| || ||||||| || || ||||
Sbjct 1598331 ATCTTGGACTTGACATTGT--CGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCT 1598388
Query 44307 TTCCCGT 44313
| || ||
Sbjct 1598389 TGCCGGT 1598395
Score = 102 bits (112), Expect = 6e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| |||||||| || |||||| |||||||||||||| | | || | || | || ||
Sbjct 1598495 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGC-CATCCTC 1598553
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | ||| | |||||||| |||
Sbjct 1598554 GAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTG 1598613
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | |||||||||| || || ||||| | || || |||||
Sbjct 1598614 GATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTT 1598673
Query 44308 TCCCGTGA 44315
|| ||||
Sbjct 1598674 GCCGGTGA 1598681
>seq5
Length=4159236
Score = 111 bits (122), Expect = 1e-19
Identities = 136/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| || ||| | || || |||||||| ||||| ||||
Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | ||| || ||||| | || || ||||| |||||||||||||| ||
Sbjct 355175 --CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 355232
Query 44326 GAAG 44329
||||
Sbjct 355233 GAAG 355236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990272765893
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |