Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 2e-29
seq5 138 3e-27
>seq3
Length=5700105
Score = 145 bits (160), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || || ||||| |||||||||||| || |||
Sbjct 1597960 CAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCCGAC 1597901
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| |||||||| || || ||||| |||||||||||
Sbjct 1597900 ACCATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 1597841
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| || ||||| | ||||| | || || ||| |
Sbjct 1597840 CGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAACATT 1597781
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 1597780 CAGAAGGAGTCGACCCTGCA-CTTG 1597757
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||| | || || || || ||
Sbjct 1598188 CAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCGGAT 1598129
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || ||||| |||||||||||
Sbjct 1598128 ACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 1598069
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| || || || | ||||| | || || ||| ||
Sbjct 1598068 CGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAACATC 1598009
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 1598008 CAGAAGGAGTCCACTCTCCACCTGGT 1597983
Score = 129 bits (142), Expect = 1e-24
Identities = 143/188 (76%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||| ||||| || || ||||||||||| ||||| ||
Sbjct 1598681 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGA 1598622
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| ||||| || ||||| || |||||||| ||||| || ||||||||||| || |
Sbjct 1598621 GCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCA 1598562
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121
| |||||||| ||||| | || |||| | ||||| ||| |||| || || || || ||
Sbjct 1598561 AGCAGCTCGAGGATGGCCGTAC-CTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 1598503
Query 178122 CATCTTGT 178129
|| || ||
Sbjct 1598502 CACCTCGT 1598495
Score = 116 bits (128), Expect = 9e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||| ||||| || ||| ||||||||||| || |||||
Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| || ||||| || || || |||||||| ||||| || || ||||||||||| ||
Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111
|||||||| || || | || || |||| || ||| |||| || ||
Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGA 1598229
>seq5
Length=4159236
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || ||||| || || || |||||||| ||||| || ||| |||||||||
Sbjct 355235 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 355176
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || || || || ||||||||||| || ||
Sbjct 355175 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 355116
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 355115 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 355057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730752738626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |