Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20lundbergii_20[genbank_20GCA_5F001455505.1_202015-12- 02] 411 sequences; 26,537,341 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq124 118 9e-22 seq365 113 4e-20 seq64 86.0 5e-12 seq2 82.4 6e-11 >seq124 Length=325275 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| ||||||| | Sbjct 289398 CCACCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 289457 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| ||| |||| || | ||||||||| || Sbjct 289458 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 289517 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || || ||| Sbjct 289518 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 289577 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 |||| ||| ||||||||||| || Sbjct 289578 TCCAAGGTGATGGTCTTGCCCGT 289600 >seq365 Length=144107 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || |||||||| || ||||| ||||||| Sbjct 47570 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCCGAA 47629 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| ||| | || || | ||||||||| || Sbjct 47630 AGTGTGCGTCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCTGGCGGG 47689 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | | ||||| || |||| Sbjct 47690 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATCGTATCCGAGGACTCCACC 47749 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| || || ||||| ||||| || || ||||| Sbjct 47750 TCAAGCGTAATCGTCTTTCCTGTCAACGTCTTGACGAAGATCTGCAT 47796 >seq64 Length=19946 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| ||||||| || | ||| ||||||||| ||||| ||||| | Sbjct 14253 CCGCCACGGAGCCGAAGCACCAGGTGGAGCGTGCTCTCCTTTTGGATGTTGTAGTCAGAG 14312 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| || ||||| |||| || | ||||||||| ||| Sbjct 14313 AGAGTCCGACCATCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 14372 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| ||||| || || | | ||| || || | | ||| Sbjct 14373 ATGCCCTCTTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGCTGCTCTCGACC 14432 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 14433 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 14479 >seq2 Length=564189 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/142 (73%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 38702 CGCGTGCTGCTCATGTCCA---TCAAGTGCGGCGGCGTGGGGCTGAACCTGACCGGCGGC 38758 |||||||||| ||| || |||||||||| | | | ||||| |||||||| | || | Sbjct 76000 CGCGTGCTGC---TGTGCAGCCTCAAGTGCGGTGCCCTCGGGCTCAACCTGACGGCCGCC 75944 Query 38759 AACCACATCATCATGCTGGAGCCGCACTGGAACCCGCAAATTGAGCTGCAGGCGCAAGAC 38818 | || | || |||| || |||||| |||||||||| | ||| |||||| ||| Sbjct 75943 ACCCGCGTCGTCATCCTCGAGCCGTTCTGGAACCCGTTTGTCGAGGAGCAGGCCATTGAC 75884 Query 38819 CGCATCCACCGCATGGGCCAGA 38840 ||| |||||||| || ||||| Sbjct 75883 CGCGTCCACCGCCTGACCCAGA 75862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257084877276