Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20lundbergii_20[genbank_20GCA_5F001455505.1_202015-12-
02] 411 sequences; 26,537,341 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq64 122 1e-22
seq365 120 3e-22
seq124 113 5e-20
>seq64
Length=19946
Score = 122 bits (134), Expect = 1e-22
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| || | |||||||||||||| || ||||| |||| |||||||| | || ||
Sbjct 14270 CACCAGGTGGAGCGTGCTCTCCTTTTGGATGTTGTAGTCAGAGAGAGTCCGACCATCCTC 14329
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| || ||||| || || ||||||||||| | || | || ||| |||||| |
Sbjct 14330 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC-T 14388
Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
|| | || | |||| | | | |||||||| || || || | |||||||| |
Sbjct 14389 GAATCTTGGACTTGACATTGTCGATTGTGTCGCTGCTCTCGACCTCAAGGGTGATGGTCT 14448
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||| || ||||| || ||||| |||||
Sbjct 14449 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 14479
>seq365
Length=144107
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| |||| || ||||| ||||| ||||| || | ||| || ||| |
Sbjct 47809 ACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGCCC 47868
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || || ||||| || || || || || ||||||||||| | ||| | | ||||||
Sbjct 47869 ATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCTGGCGGGATACCCTCCTT 47928
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| ||| || | | | | |||||| ||| ||||| || | ||| ||
Sbjct 47929 GTCTTGGATCTTTGACTTCACATTGTCAATCGTGTCTGACGACTCCACCTCCAACGTAAT 47988
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| |||||||| |||||||| |||||
Sbjct 47989 CGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 48024
Score = 102 bits (112), Expect = 9e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| |||| || |||||| || || ||||| || | || || || |
Sbjct 47581 ACGCAGCACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGTCC 47640
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| ||||| || || || ||||||||||| | ||| | || ||||||
Sbjct 47641 GTCCTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATGCCCTCCTT 47700
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || |||| | | | ||| || || ||||| || | ||| ||
Sbjct 47701 GTCCTGGATCTTCGACTTGACATTGTCAATCGTATCCGAGGACTCCACCTCAAGCGTAAT 47760
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || | |||||| || ||||| |||||
Sbjct 47761 CGTCTTTCCTGTCAACGTCTTGACGAAGATCTGCAT 47796
>seq124
Length=325275
Score = 113 bits (124), Expect = 5e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| |||| || |||||| || || ||||| || | ||| ||||| |||| ||
Sbjct 289415 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTCCGGCCGTCCTC 289474
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| ||||| || || || ||||||||||||| ||| | || ||||||||||
Sbjct 289475 GAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 289534
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
||| || |||| | | | |||||| || || || || | |||||||| ||
Sbjct 289535 GATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 289594
Query 43154 GCCCGTTAGCGTCTTTACAAAG 43175
|||||| || ||||| || |||
Sbjct 289595 GCCCGTAAGGGTCTTCACGAAG 289616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814662287080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |