Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20lundbergii_20[genbank_20GCA_5F001455505.1_202015-12-
02] 411 sequences; 26,537,341 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq117 140 2e-28
seq2 127 1e-24
seq64 114 9e-21
>seq117
Length=7839
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1551 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1610
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1611 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1645
>seq2
Length=564189
Score = 127 bits (140), Expect = 1e-24
Identities = 213/305 (70%), Gaps = 6/305 (2%)
Strand=Plus/Minus
Query 6183 CGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAG 6242
||| |||| | |||| |||||||||||||| ||| ||||||| ||||| |||||
Sbjct 480274 CGTGATGTCACCGACGTCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATCGAG 480215
Query 6243 GGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGC-CTGAAG--TCGCTAAGGCG 6299
|| ||||| ||||| || || || || ||||| || | | | || |||| || ||
Sbjct 480214 GGCAAGGGCAACGGCATCAAGACGGT---TGTCACCAACCTCAGCAGCGTCGCCCAGTCG 480158
Query 6300 CTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACG 6359
|||| ||||| | |||||| || || || || || | ||| || ||||| |||||
Sbjct 480157 CTCGCCCGCCCGGGAGCCTACCTGATCAAGTACTTTGGCTTCGAGCTGGGCGCCCAGACC 480098
Query 6360 CAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTG 6419
| |||| | |||| |||| ||| | ||||| | || | | |||||||||
Sbjct 480097 AACATTGACCCGCCCGACGATCGCTGGATCATCAACGGCGCCCACGAGGCCGCCAAGCTG 480038
Query 6420 CAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCG 6479
||||||| || |||||||| || ||||||||| || || | | ||| | |||||
Sbjct 480037 CAGGACTATCTCGACGGCTTCATCTCCAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCCC 479978
Query 6480 GAGAC 6484
|||||
Sbjct 479977 GAGAC 479973
>seq64
Length=19946
Score = 114 bits (126), Expect = 9e-21
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167
||||| || || |||||||||||||| || ||||| ||||| | | || | || ||
Sbjct 14270 CACCAGGTGGAGCGTGCTCTCCTTTTGGATGTTGTAGTCAGAGAGAGTCCGACCATCCTC 14329
Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227
| || ||||| || || || ||||| || || || | ||||| ||| |||||||||
Sbjct 14330 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 14389
Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287
||| || ||| ||||| | || || || | || || || || | || || || ||
Sbjct 14390 AATCTTGGACTTGACATTGTCGATTGTGTCGCTGCTCTCGACCTCAAGGGTGATGGTCTT 14449
Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||||||| ||| |||||||| |||||||||
Sbjct 14450 GCCCGTCAGGGTCTTCACGAAGATCTGCATG 14480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945522228541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |