Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20lundbergii_20[genbank_20GCA_5F001455505.1_202015-12- 02] 411 sequences; 26,537,341 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq117 140 2e-28 seq2 127 1e-24 seq64 114 9e-21 >seq117 Length=7839 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1551 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1610 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1611 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1645 >seq2 Length=564189 Score = 127 bits (140), Expect = 1e-24 Identities = 213/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 6183 CGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAG 6242 ||| |||| | |||| |||||||||||||| ||| ||||||| ||||| ||||| Sbjct 480274 CGTGATGTCACCGACGTCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATCGAG 480215 Query 6243 GGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGC-CTGAAG--TCGCTAAGGCG 6299 || ||||| ||||| || || || || ||||| || | | | || |||| || || Sbjct 480214 GGCAAGGGCAACGGCATCAAGACGGT---TGTCACCAACCTCAGCAGCGTCGCCCAGTCG 480158 Query 6300 CTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACG 6359 |||| ||||| | |||||| || || || || || | ||| || ||||| ||||| Sbjct 480157 CTCGCCCGCCCGGGAGCCTACCTGATCAAGTACTTTGGCTTCGAGCTGGGCGCCCAGACC 480098 Query 6360 CAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTG 6419 | |||| | |||| |||| ||| | ||||| | || | | ||||||||| Sbjct 480097 AACATTGACCCGCCCGACGATCGCTGGATCATCAACGGCGCCCACGAGGCCGCCAAGCTG 480038 Query 6420 CAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCG 6479 ||||||| || |||||||| || ||||||||| || || | | ||| | ||||| Sbjct 480037 CAGGACTATCTCGACGGCTTCATCTCCAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCCC 479978 Query 6480 GAGAC 6484 ||||| Sbjct 479977 GAGAC 479973 >seq64 Length=19946 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || || |||||||||||||| || ||||| ||||| | | || | || || Sbjct 14270 CACCAGGTGGAGCGTGCTCTCCTTTTGGATGTTGTAGTCAGAGAGAGTCCGACCATCCTC 14329 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || ||||| || || || ||||| || || || | ||||| ||| ||||||||| Sbjct 14330 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 14389 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || || || | || || || || | || || || || Sbjct 14390 AATCTTGGACTTGACATTGTCGATTGTGTCGCTGCTCTCGACCTCAAGGGTGATGGTCTT 14449 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||| ||| |||||||| ||||||||| Sbjct 14450 GCCCGTCAGGGTCTTCACGAAGATCTGCATG 14480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945522228541