Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20lundbergii_20[genbank_20GCA_5F001455505.1_202015-12- 02] 411 sequences; 26,537,341 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq222 109 1e-18 seq2 109 1e-18 seq401 105 1e-17 seq68 96.9 7e-15 seq404 86.0 1e-11 seq223 86.0 1e-11 seq200 86.0 1e-11 seq112 86.0 1e-11 >seq222 Length=676535 Score = 109 bits (120), Expect = 1e-18 Identities = 247/364 (68%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 87559 AAGGCCGGCAATCTTCGCGATGCTTTTGCCAAGAC-GAGCGCACCATTCTTTGTCATCTT 87617 ||||||||||| || ||| || ||| || || ||| || | | |||| ||||||| Sbjct 328882 AAGGCCGGCAACCTCCGCTGGGCCTTTTCCCGCACCGAGGGCGAC-TACTTTATCATCTT 328824 Query 87618 CGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATGCCATACTTCAACTA 87677 || || || |||||||| ||| ||| ||||| || | ||| | || || Sbjct 328823 TGACGCCGATTTCTGCCCCCGCCCCGACCTCATCCGCGAGCTC--GCCGTCGAGCACCTC 328766 Query 87678 --TGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGT-CCAGACCA 87734 |||| | || |||||||||||||| ||||||| ||||| || ||| || || || Sbjct 328765 GCTGACCACACCGTCGCCATCGTCCAGTCCCCCCAATTCTTCCGCGT-CGTGCCCGAGCA 328707 Query 87735 GACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCATCCAGGT 87794 ||| ||||| |||| | || || | |||||| || ||||||||| || ||||||| Sbjct 328706 GACCTGGGTTGAGCAGGGCGCCGGCGCCACCCAGGAGCTCTTCTACCGCGTCGTCCAGGT 328647 Query 87795 GTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTATGTATCGTCGCGA 87854 ||| | | ||||| | | ||||| || | ||| ||||| || |||| Sbjct 328646 CAACCGCAACCGCTGGGGCGCCTCTATCTGCGTCGGCAGCAATGCCATGTACCGCCGCGC 328587 Query 87855 GGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCCACACCGG 87914 ||||||| | | || ||||| ||||| || || ||| ||| || || |||||||| Sbjct 328586 CGCCCTGGATGAAGTCGGTGGCACCGCTGACATTGGCTTCTCCGAAGACGTACACACCGG 328527 Query 87915 TTTC 87918 ||| Sbjct 328526 CTTC 328523 Score = 95.1 bits (104), Expect = 2e-14 Identities = 242/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| ||||||||||||||||||||| ||| Sbjct 132093 TCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 132034 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||| |||| || |||||| || || | | |||||| || || ||||| | Sbjct 132033 GAGCGGTACACCTTGTCATTGCCAAGAGCAACCAGTAGGCGGTCGGCAACGAACTCAATG 131974 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || ||| || ||||||||||| | | | || |||| ||||| | | Sbjct 131973 TATTGCTTCATGAGGGTGGAGTTCATGCCGAGAAGAGCGCAGGGAAGCGCCTCGGTCAGG 131914 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797 || |||| || | || || || | | || ||| ||| ||| ||| Sbjct 131913 AACTCCTGCTCAATCTTGACAGCATCGACAATGATATCCTCGATCAGCTGCTTGC----- 131859 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 | | ||||| || | ||| | || || | |||| | |||||| ||||||| Sbjct 131858 TCGGGCGGTTCTTGAGATGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGT 131799 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| || | |||||| || | |||||||||||||| ||||| ||| | | || Sbjct 131798 CACGAGAAATAAGCTCGTTCGAGAATGTCAGGCCAGGCATCAGGCCACGCTTCTTCAACC 131739 Query 251918 AGAAGAT 251924 ||||||| Sbjct 131738 AGAAGAT 131732 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 675983 GCCCGGTTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGCGGGTTCGACC 676042 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 676043 CCCGCATCGGGC 676054 >seq2 Length=564189 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || |||| ||||||||||| ||| Sbjct 250404 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCCTACGGTGCCAAGATTCTGCTGAAC 250345 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| |||| | | ||||||||| | || || ||||| ||||||||| || | Sbjct 250344 CAGACCAGCCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCC 250285 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 250284 GGCAAGTCCACCCTGATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCGAAGCA 250226 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| |||| || ||||||||| | ||||| Sbjct 250225 GAGCGAGGTCAAGACCGTGTTCGTCGAGCACGACCTGGACTC 250184 >seq401 Length=585928 Score = 105 bits (116), Expect = 1e-17 Identities = 360/559 (64%), Gaps = 18/559 (3%) Strand=Plus/Minus Query 218486 TGGACCAGTCGAAGACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTT 218545 |||||||||||| | | |||| | | | |||||| || |||||||||| || || | Sbjct 157694 TGGACCAGTCGACAAAGAGCATCACGTACTCGGACTTCGTCAACAAGGAGCTGATCCTGT 157635 Query 218546 TCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGC 218605 || | |||| ||| || || || || || || || |||||||| | Sbjct 157634 TCAGTATGGCTGATAACATGCGCTCAATCCCGTCTGTCGTCGACGGACTCAAGCCCGGTC 157575 Query 218606 AGCGTAAGATCCTCTT----TGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTC 218661 |||| ||| || ||| |||| | ||| |||| | || | || ||||| Sbjct 157574 AGCGCAAGGTCATCTACACGTGCC----TGAAGAAGAACATTGTCAAGGACCAGAAGGTG 157519 Query 218662 GCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTG 218721 | |||| | || | ||||||| || | ||| ||||| |||||||| | ||| Sbjct 157518 TTTGAGTTGGCCGGCTCTGTATCCAAACTGGCTGCTTACCACCACGGTGATGCGTCGCTG 157459 Query 218722 CAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTG 218781 || ||||||| ||| |||||||| ||| ||| ||| |||||||| |||| ||| Sbjct 157458 CACCAGACCATTGTCGGCCTGGCACAGAACTTTGTCGGCTCCAACAACATCAACTGTCTG 157399 Query 218782 CTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGG 218841 |||| |||| | |||||||||||||| | ||||| || |||| ||| | Sbjct 157398 GAACCCAGCGGTAACTTTGGTTCTCGTCTTTCCGGTGGCTCCGACGCTGCTAGTGCTCGA 157339 Query 218842 TATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAA---TCAGGCCGATGAT 218898 || || || || |||||||| | | |||| |||||||| || || ||| | Sbjct 157338 TACATTTTCACCCGTCTGTCGCCCTTTGCTCGCCGTGTGTTCAATCCTCTGGACGAGCCT 157279 Query 218899 GTGCTCCTTAAGTATCTTGAGGACG--ATGGTTCTTCGATTGAGCCCGAGTGGTATGTGC 218956 |||||| || | |||| || | | ||| || ||||| || || | | Sbjct 157278 GTGCTCGAGAACAACATTGACGAGGGCAGCGTT-----ATCGAGCCGAAGAACTACGCCC 157224 Query 218957 CTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTG 219016 | | | ||| | | || || ||||||||| |||||||||| || || | || || Sbjct 157223 CCATTGTGCCGATGGTTCTGGTCAATGGTGCCGATGGTATCGGCACCGGTTGGAGCACGT 157164 Query 219017 ACATTCCTTCTTACAATCC 219035 |||||| ||||||||| Sbjct 157163 CCATTCCCAATTACAATCC 157145 >seq68 Length=355481 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC---C 280232 ||||| || || ||||| || ||||||||||| ||||| | || ||||||||||| | Sbjct 266910 ATTGGCCCGAACGGTGCCGGAAAGTCTACCCTCATCAAGCTGCTTACTGGCGAGACGATC 266851 Query 280233 CAGGCCA-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 | | | | | || |||| |||||| |||||| |||| || | ||| || || Sbjct 266850 CCGTCGACCGGAAAGGTC----GAGAAGCACCCCAACTTGCGTATCGGCTACATCAAGCA 266795 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||| | | ||| |||| | |||||||| | ||| || ||||| ||| | ||||| Sbjct 266794 ACACGCTCTGGAGCACGTCGAAATGCACCTGGAGAAGACACCGAACCAGTACCTCCAGTG 266735 Query 280352 GCGCTATGC 280360 ||| ||||| Sbjct 266734 GCGTTATGC 266726 >seq404 Length=77058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 20852 GCCCGGTTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGCGGGTTCGACC 20911 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 20912 CCCGCATCGGGC 20923 >seq223 Length=273046 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 207109 GCCCGGTTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGCGGGTTCGACC 207050 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 207049 CCCGCATCGGGC 207038 >seq200 Length=274600 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 36287 GCCCGGTTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGCGGGTTCGACC 36346 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 36347 CCCGCATCGGGC 36358 >seq112 Length=899748 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 207170 GCCCGGTTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGCGGGTTCGACC 207111 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 207110 CCCGCATCGGGC 207099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831387475651