Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2400 197 1e-45 seq2379 152 5e-32 seq1979 123 3e-23 seq1920 118 1e-21 >seq2400 Length=47555 Score = 197 bits (218), Expect = 1e-45 Identities = 215/285 (75%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| |||||| ||||||||||| | |||||| | ||||| Sbjct 7034 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCGTTCTGGACTGCTGAGGAGATCGACCTC 7093 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| | |||||| ||| || | Sbjct 7094 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTTCTTCGTCTCG 7153 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||| || || |||||| ||||||||||||||||||||| || || ||||| Sbjct 7154 CACATCCTGGCGTTCTTTGCCGCCTCCGACGGCATCGTCAACGAGAACCTAGTTGAGCGC 7213 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| |||||| | ||||| || ||||| |||||||| |||||| ||| Sbjct 7214 TTCAGTGCTGAGGTCCAGGTGCCGGAGGCTCGCTGCTTTTACGGCTTCCAGATCATGATG 7273 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| ||||| || | || || ||||||||||| ||| Sbjct 7274 GAGAACGTCCACTCCGAGACATACTCCCTGCTCATCGACACCTAC 7318 Score = 172 bits (190), Expect = 6e-38 Identities = 270/384 (70%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || |||||| | | | | ||| || |||| | |||||| Sbjct 7442 AGAAGGCCGATTGGGCTCTCAAGTGGATCTCAGACCGCGAGTCCACCTTTGCTCAGCGCC 7501 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || || || || || |||||| ||||||| || ||| | |||| || | Sbjct 7502 TGGTCGCTTTTGCCGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTCTCTTCCATCTTCT 7561 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| |||||||| ||||| |||||||| ||| ||||||||| || || | | Sbjct 7562 GGCTGAAGAAGCGCGGCCTGATGCCTGGCCTGACCTTCTCCAACGAGCTTATTTCTCGTG 7621 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| ||||| |||||| || || |||||||| ||| || | | || || | Sbjct 7622 ACGAGGGCCTGCACACCGACTTCGCTTGCCTGCTGTTCTCTCATCTGAAGAACCGCCCCA 7681 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | || |||||| || ||| || ||| || |||||| ||||||| Sbjct 7682 GCAAGGAGATGATCCAGGAGATAATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTCA 7741 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 |||| || || || |||| |||||| || | || | | | ||| ||| ||||| Sbjct 7742 CCGAGGCCCTTCC-CTGCGCTCTGCTCGGCATGAACTCCACACTCATGAAGCAGTACATT 7800 Query 117341 GAGTTCGTCGCCGACAGGCTGCTG 117364 |||||||| |||||| | || ||| Sbjct 7801 GAGTTCGTTGCCGACCGCCTTCTG 7824 >seq2379 Length=13478 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 4785 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 4726 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| |||||||||||| |||| || Sbjct 4725 GATACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 4667 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || || || ||||| || |||| ||||| ||| ||| ||||| Sbjct 4666 GCAGCGTCTGATTTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACGCTCTCCGATTACAA 4607 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| |||||||| || |||| || | ||||| Sbjct 4606 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTGCGTGGCGG 4559 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || ||| | || || || | | Sbjct 4101 ATGCAGATTTTCGTCAAGACGCTGACAGGGAAGACGATTACCTTGGAGGTTGAGTCATCA 4042 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | ||| || |||| ||||| |||||||| ||| | ||||| Sbjct 4041 GATACGATTGACAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 3983 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | |||||||| |||||||| |||| ||||||||| |||||||| Sbjct 3982 GCAGCGGCTCATTTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGACTACAA 3923 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | |||||||| || ||| | || || | |||||| Sbjct 3922 TATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGTCTGCGTGGCGGC 3874 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| ||||| |||||||| || |||||| | || || || | | Sbjct 4329 ATGCAGATTTTCGTAAAGACGCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 4270 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | ||| ||||| | ||||| ||||||||||| | ||||| Sbjct 4269 GACACGATTGACAATG-TGAAGTCTAAAATCCAGGACAAGGAGGGCATCCCGCCAGACCA 4211 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||| |||| || | ||||| || |||||||| Sbjct 4210 GCAGCGCCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACGCTATCGGACTACAA 4151 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || ||| |||| Sbjct 4150 CATCCAGAAGGAATCGACTCTTCACCTGGTGCTGCG 4115 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 4557 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 4498 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| ||||| | ||||| Sbjct 4497 GACACCATCGATAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 4439 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | || ||||| |||||||| Sbjct 4438 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTTTCGGACTACAA 4379 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | |||||||| || ||| |||| Sbjct 4378 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 4343 >seq1979 Length=23555 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 2992 TTCGTGAAGACCCTTACGGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 2933 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||||||||| | |||||||| || || Sbjct 2932 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTG 2873 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || |||| || ||||| |||||||| ||||||||| Sbjct 2872 ATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTGTCTGACTACAATATCCAGAAG 2813 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| | || ||||| || ||| | ||| || | || || Sbjct 2812 GAGTCGACTCTGCACCTGGTGCTCCGCCTGCGTGGTGG 2775 >seq1920 Length=25525 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| || || || ||| | || ||||| || | Sbjct 16945 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGAGCAGC 16886 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||||||||| | |||||| Sbjct 16885 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 16826 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || || | || || ||| ||| |||||| Sbjct 16825 CAGCGCTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGGACTCTCTCCGATTACAAC 16766 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| ||| || || || ||| Sbjct 16765 ATCCAGAAGGAGAGCACTCTCCACCTGGTG 16736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201895075120