Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 123 2e-23
seq1920 116 3e-21
seq2494 107 2e-18
seq1979 96.9 3e-15
>seq2379
Length=13478
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||||||| | ||||| ||||||||||| |||||
Sbjct 4589 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCG 4648
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| | || |||||||||||||| || || |||||||||||||| ||| || ||
Sbjct 4649 GCAAAAATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 4708
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| || | ||||||||||| ||| | || ||||| || || ||
Sbjct 4709 ACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 4768
Query 118722 TTTACAAAAATCTGCATG 118739
|| || ||||||||||||
Sbjct 4769 TTGACGAAAATCTGCATG 4786
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | || ||||| ||| | || || || || || |||||||| ||
Sbjct 4101 TACCACCACGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCG 4160
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||||| |||||| | ||| || |||||| |||| || |||||||| || || |
Sbjct 4161 ATAGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCG 4220
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| ||||| || || | || | ||||||| ||| |
Sbjct 4221 GGATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCA 4280
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||| | ||| | ||| ||||| || || || ||||| ||||||||||||
Sbjct 4281 CCTCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCATG 4330
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| | | || ||||| ||| | || ||||| || ||||||||||| ||
Sbjct 4331 CCACCGCGGAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAA 4390
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || |||||| ||||| || |||||| | || || |||||||| ||||| ||
Sbjct 4391 AGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGG 4450
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| ||||||||||| || || || || | |||| |||||||| |||||||
Sbjct 4451 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACC 4510
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | || ||||| ||||| || || || || ||||||||
Sbjct 4511 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || || || || || || ||||| || | ||||| |||||
Sbjct 3892 CACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCCTC 3951
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || | ||||| |||||||| || || || ||||||||||||||
Sbjct 3952 CAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 4011
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | || | || || | ||| ||||| | ||| | ||| ||
Sbjct 4012 AATCTTCGACTTCACGTTGTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTCTT 4071
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || |||||||||||
Sbjct 4072 CCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101
>seq1920
Length=25525
Score = 116 bits (128), Expect = 3e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||||| || ||| || || |||||||||||| | ||| || ||| ||
Sbjct 16736 CACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCTTC 16795
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| | |||||||| || || || ||||||||||||||
Sbjct 16796 TAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 16855
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| ||||||||||||| | ||| | || ||
Sbjct 16856 GATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTCTT 16915
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|| || || ||||| || || ||||||||||||
Sbjct 16916 ACCCGTGAGGGTTTTCACGAAGATCTGCATGGCT 16949
>seq2494
Length=11727
Score = 107 bits (118), Expect = 2e-18
Identities = 116/151 (77%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 133219 ACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCGACGTG 133277
|| ||||||| || ||||||||||| || || || || | ||| || | || ||||||
Sbjct 3086 ACGGGTTGACAACCTGAAACTCGCCCGCCAGCACACGGCGCGAG-TAGATGTTGGACGTG 3028
Query 133278 AACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTAC 133337
|||| ||||| ||||||||||||| || ||||||| ||||| ||| || ||||||
Sbjct 3027 TACGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGACGTCGACGCTGTTGGCATGGGG 2968
Query 133338 GCCACCAACAAAGAGTTTCTTACGCCGTACT 133368
|||||||||| | ||| | ||||||| ||
Sbjct 2967 GCCACCAACAGACTGTTGCGGACGCCGTGCT 2937
>seq1979
Length=23555
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || || || ||||| || || || || |||||
Sbjct 2792 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTCCTC 2851
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || ||||| |||| || |||||||| ||||| || ||||||||||||||
Sbjct 2852 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2911
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||||| | ||||||||| | ||| | || ||
Sbjct 2912 GATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 2971
Query 118709 GCCGGTCAGAGTTTTTACAAA 118729
||| || || || || || ||
Sbjct 2972 GCCCGTAAGGGTCTTCACGAA 2992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433816193003404
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