Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2379 118 1e-21 seq1979 116 4e-21 seq1920 109 6e-19 >seq2379 Length=13478 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| || |||||| ||||| ||||| || | || ||||| | Sbjct 4343 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTCCGTCCA 4402 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| || || ||||||||||||| || | | ||||||| Sbjct 4403 TCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGGATACCCTCCTTG 4462 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| | | | ||||| ||| || || || | |||||| Sbjct 4463 TCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACCTCCAGAGTGATG 4522 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 4523 GTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || | || || | |||||| |||||||| Sbjct 4139 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAG 4198 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | ||| | || |||||||||| |||||| || | | Sbjct 4199 ATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTG 4258 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||| ||||| || | ||||| || |||||||| ||||||||||| Sbjct 4259 TCAATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACG 4318 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 4319 AAAATCTGCAT 4329 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| || | || || || |||| || |||||||| || || || Sbjct 3911 TCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAA 3970 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || |||||||||| ||| | || | | ||| Sbjct 3971 ATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACGTT 4029 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||| || || || || || | || || || || || || |||||||| || Sbjct 4030 GTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGAC 4089 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 4090 GAAAATCTGCAT 4101 >seq1979 Length=23555 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || |||||||| |||| ||| || || |||| || Sbjct 2792 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTCCTC 2851 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || || ||||||||||||| ||| | || |||||||||| Sbjct 2852 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2911 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | |||||| || || || || | |||||||| || Sbjct 2912 GATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 2971 Query 43154 GCCCGTTAGCGTCTTTACAAAG 43175 |||||| || ||||| || ||| Sbjct 2972 GCCCGTAAGGGTCTTCACGAAG 2993 >seq1920 Length=25525 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||||||||||| || || |||||||| | |||||||| | || || Sbjct 16736 CACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCTTC 16795 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||| || ||||| || | ||||||||||| | ||| | || |||||||||| Sbjct 16796 TAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 16855 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | |||||||| || || || | || || || || Sbjct 16856 GATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTCTT 16915 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || || ||||| ||||| Sbjct 16916 ACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571798394076360