Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 118 1e-21
seq1979 116 4e-21
seq1920 109 6e-19
>seq2379
Length=13478
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| || |||||| ||||| ||||| || | || ||||| |
Sbjct 4343 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTCCGTCCA 4402
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| |||||||| || || ||||||||||||| || | | |||||||
Sbjct 4403 TCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGGATACCCTCCTTG 4462
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | ||||| ||| || || || | ||||||
Sbjct 4463 TCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACCTCCAGAGTGATG 4522
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || |||||||| || ||||| |||||
Sbjct 4523 GTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || | || || || | || || | |||||| ||||||||
Sbjct 4139 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAG 4198
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || ||||||||||| | ||| | || |||||||||| |||||| || | |
Sbjct 4199 ATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTG 4258
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||| ||| ||||| || | ||||| || |||||||| |||||||||||
Sbjct 4259 TCAATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACG 4318
Query 43173 AAGATTTGCAT 43183
|| || |||||
Sbjct 4319 AAAATCTGCAT 4329
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || |||||||| || | || || || |||| || |||||||| || || ||
Sbjct 3911 TCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAA 3970
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
||||| ||||||||||| | || | || |||||||||| ||| | || | | |||
Sbjct 3971 ATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACGTT 4029
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||| || || || || || | || || || || || || |||||||| ||
Sbjct 4030 GTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGAC 4089
Query 43172 AAAGATTTGCAT 43183
|| || |||||
Sbjct 4090 GAAAATCTGCAT 4101
>seq1979
Length=23555
Score = 116 bits (128), Expect = 4e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| |||| || |||||| || |||||||| |||| ||| || || |||| ||
Sbjct 2792 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTCCTC 2851
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| ||||| || || || ||||||||||||| ||| | || ||||||||||
Sbjct 2852 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2911
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
||| || |||| | | | |||||| || || || || | |||||||| ||
Sbjct 2912 GATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 2971
Query 43154 GCCCGTTAGCGTCTTTACAAAG 43175
|||||| || ||||| || |||
Sbjct 2972 GCCCGTAAGGGTCTTCACGAAG 2993
>seq1920
Length=25525
Score = 109 bits (120), Expect = 6e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| || | ||||||||||| || || |||||||| | |||||||| | || ||
Sbjct 16736 CACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCTTC 16795
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||||||| || ||||| || | ||||||||||| | ||| | || ||||||||||
Sbjct 16796 TAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 16855
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
||| || |||| | | | |||||||| || || || | || || || ||
Sbjct 16856 GATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTCTT 16915
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || || || || ||||| |||||
Sbjct 16916 ACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571798394076360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |