Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1917 120 7e-22 seq1981 100 6e-16 seq2134 93.3 9e-14 >seq1917 Length=25534 Score = 120 bits (132), Expect = 7e-22 Identities = 270/399 (68%), Gaps = 24/399 (6%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| || || || || ||||| ||||| || ||||||||||||||| Sbjct 1474 TGCTCTTCTACGGCCCGCCAGGCACGGGCAAAACGTCGACGATCCTGGCGCTGGCCAAGG 1533 Query 254071 CCCTGTT-GGGCGAGGGGAACATGAGAGAGCGCG--TGCTCGAGCTGAACGCTTCTGACG 254127 |||| |||| | || || | || | |||| ||||| ||||| || |||| Sbjct 1534 AGCTGTACGGGCCCG---AATTTGTCAAGTCGAGGGTGCTGGAGCTCAACGCGTCCGACG 1590 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTCCAA----GATGTCGA 254181 | || || | |||| || || ||| ||||| ||||| | | || | || ||| Sbjct 1591 AGCGGGGCATCTCGATCGTGCGGGAGAAGGTCAAGGACTTTGCGCGAATGCAGCTGACGA 1650 Query 254182 TTTCGTCGTTC--CAACC----CGGCT------GTCCGCCTTTCAAGCTCGTGATCCTGG 254229 | || || | | ||| | ||| | ||||| |||||||| | | || | Sbjct 1651 ATCCGCCGCCCGGCTACCGCGACCGCTTCCCGTGCCCGCCCTTCAAGCTGATCGTGCTAG 1710 Query 254230 ACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGC 254289 ||||||| ||| | |||||| ||||||||| |||||| ||||| |||||||||||| Sbjct 1711 ACGAGGCCGACTCGATGACGCAGGACGCGCAGAGCGCCCTGCGCCGGACGATGGAGACGT 1770 Query 254290 ACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGC 254349 || | | ||||| || ||||| | ||||||||||| | ||||||| ||||| Sbjct 1771 ACAGCAAGATCACGCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCATCGACCCGC 1830 Query 254350 TGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 |||| || ||| |||||| || |||| | ||||| Sbjct 1831 TGGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 1869 >seq1981 Length=23411 Score = 100 bits (110), Expect = 6e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079 |||| || || || || || |||||||| |||||| |||||||||| || | | | | Sbjct 13765 ACGGGCCGCCGGGCACGGGAAAGACGTCGACCATCTTGGCGCTGGCGCGGCGCATCTACG 13706 Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139 ||| | ||||| | | || ||||| ||||||||||| || ||||| ||||| | | Sbjct 13705 GCGCAGAGAACACGCGGCAGATGGTGCTGGAGCTGAACGCGTCCGACGACCGCGGTATCG 13646 Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT 254167 ||||||| ||||| |||||||||| || Sbjct 13645 ACGTCGTGCGCGAGCAGATCAAGACATT 13618 >seq2134 Length=52788 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475 ||| | ||| |||||||| ||| |||| | |||||| | | ||||||||||||| | Sbjct 25287 CTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCACGCAAACGCGAACCGCGTCGTGTT 25346 Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535 |||||| | ||||| |||| ||||||||||| || || | ||||| ||| || Sbjct 25347 CGAGTAGATCTCCATCGTCCGCCGCAGCGCCTGCTGCGCTCCCGACGTCATACTGTCCGC 25406 Query 115536 CTCGTCGAGAACGACAATCTT 115556 |||||| || | ||||||||| Sbjct 25407 CTCGTCCAGGATGACAATCTT 25427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073729433242816