Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2494 134 2e-26 seq2400 113 6e-20 >seq2494 Length=11727 Score = 134 bits (148), Expect = 2e-26 Identities = 465/717 (65%), Gaps = 20/717 (3%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || |||||||| || | || | ||| | ||||| || | || ||||||| || | Sbjct 2268 TCAAACTCGTCGCCGTAGACGTCCGCCAGACCGGGACACTCGTTGGGGCACATCAGCGTC 2209 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| | || || || ||||| || |||||||| ||||| || || | || Sbjct 2208 CACTCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCAGGGATCCAGAGCGCCAGGAAC 2149 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 63365 ||||| | | | | ||||| || || || ||||| || || |||||| | Sbjct 2148 AGATCGCGAGCACGAATCTCCTCCTTGCC---ATGGTTTTTGCGCAGGTCAAGGAACTCA 2092 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||||| |||||| || || | ||| ||| | | | || || || |||||||| Sbjct 2091 AAGACATCAGCATGCCAAGGCTCTAGGTAGATGCAGAAAGCGCCCGGGCGCTTGTTTCCG 2032 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 ||||| || | || | ||| ||||| || || || | | ||| || || || || || Sbjct 2031 CCCTGGTCCACATAGCGAGCCGTGTTGTTGTAGACACGGAGCATAGGGATGATGCCATTG 1972 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATA 63543 || | || || || |||| || ||| || | || || ||| | |||| Sbjct 1971 GACGTGCCGTTTGTGCCGGCAATGTAGGAGCCGGTAGCCCGGATACGGTGGACGTTGA-- 1914 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603 | || || || || ||| | || ||||| | || || || | ||||||||||| | Sbjct 1913 GGCCAATGCCACCAGCCGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATAC 1854 Query 63604 CTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 | || ||||| ||||| | |||| | || || ||| ||||||||| | | | Sbjct 1853 CCTCAATGCTGTCATCCTTTATGTCCACAAGGAAGCAGGATGACATTTGGGCCTGTGGTG 1794 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT-TTCAGAAAGTAGATTG 63722 | || || || || | || || || || ||||| || |||| ||| | |||| ||| Sbjct 1793 TGCCGGCGTTGAAGAGTGTCGGCGAGGCATGCGTGAAGAATTTGTTCGACATGTAG-TTG 1735 Query 63723 TACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGACACGCAT 63778 || ||||||| | || | |||| || |||| || ||||| || ||||| Sbjct 1734 TATGTCTCAACCACACGCTCCACATTATCACCCCAGATG----CCAACTGCCACGCGCAT 1679 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 | ||||||||| || | || ||||| ||| | | || | | ||| || || Sbjct 1678 AATCATGTGCTGCGGCCGCTCGACAATCTTGCCATCGAGCTTGAGTAGGTAAGACCGCTC 1619 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63895 || || || ||||||||||| | ||| ||||| || ||||| | ||| |||| Sbjct 1618 CAGTGTCTTGAAACCAAAATATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCGA 1562 >seq2400 Length=47555 Score = 113 bits (124), Expect = 6e-20 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| |||||| |||||||| | | ||| | ||||| || Sbjct 7658 AACAGCAGGCAAGCGAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATAAGCTCGTTGGAG 7599 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| ||||| ||||| || ||||| || ||||||| ||| | ||| Sbjct 7598 AAGGTCAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAAGAGAAGGCACCG 7539 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 |||||||| || || || || ||||| || | || | || || | || || Sbjct 7538 CTGAAGAAGATGCCCTCCACAGCGGCAAAAGCGACCAGGCGCTGAGCAAAGGTGGACTCG 7479 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| |||||||| ||||||||||||||||||| Sbjct 7478 CGGTCTGAGATCCACTTGAGAGCCCAATCGGCCTTCTT 7441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629796446001360