Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2494 134 2e-26
seq2400 113 6e-20
>seq2494
Length=11727
Score = 134 bits (148), Expect = 2e-26
Identities = 465/717 (65%), Gaps = 20/717 (3%)
Strand=Plus/Minus
Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
|| |||||||| || | || | ||| | ||||| || | || ||||||| || |
Sbjct 2268 TCAAACTCGTCGCCGTAGACGTCCGCCAGACCGGGACACTCGTTGGGGCACATCAGCGTC 2209
Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308
||||| |||| | || || || ||||| || |||||||| ||||| || || | ||
Sbjct 2208 CACTCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCAGGGATCCAGAGCGCCAGGAAC 2149
Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 63365
||||| | | | | ||||| || || || ||||| || || |||||| |
Sbjct 2148 AGATCGCGAGCACGAATCTCCTCCTTGCC---ATGGTTTTTGCGCAGGTCAAGGAACTCA 2092
Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425
| | ||||| |||||| || || | ||| ||| | | | || || || ||||||||
Sbjct 2091 AAGACATCAGCATGCCAAGGCTCTAGGTAGATGCAGAAAGCGCCCGGGCGCTTGTTTCCG 2032
Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485
||||| || | || | ||| ||||| || || || | | ||| || || || || ||
Sbjct 2031 CCCTGGTCCACATAGCGAGCCGTGTTGTTGTAGACACGGAGCATAGGGATGATGCCATTG 1972
Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATA 63543
|| | || || || |||| || ||| || | || || ||| | ||||
Sbjct 1971 GACGTGCCGTTTGTGCCGGCAATGTAGGAGCCGGTAGCCCGGATACGGTGGACGTTGA-- 1914
Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603
| || || || || ||| | || ||||| | || || || | ||||||||||| |
Sbjct 1913 GGCCAATGCCACCAGCCGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATAC 1854
Query 63604 CTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663
| || ||||| ||||| | |||| | || || ||| ||||||||| | | |
Sbjct 1853 CCTCAATGCTGTCATCCTTTATGTCCACAAGGAAGCAGGATGACATTTGGGCCTGTGGTG 1794
Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT-TTCAGAAAGTAGATTG 63722
| || || || || | || || || || ||||| || |||| ||| | |||| |||
Sbjct 1793 TGCCGGCGTTGAAGAGTGTCGGCGAGGCATGCGTGAAGAATTTGTTCGACATGTAG-TTG 1735
Query 63723 TACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGACACGCAT 63778
|| ||||||| | || | |||| || |||| || ||||| || |||||
Sbjct 1734 TATGTCTCAACCACACGCTCCACATTATCACCCCAGATG----CCAACTGCCACGCGCAT 1679
Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838
| ||||||||| || | || ||||| ||| | | || | | ||| || ||
Sbjct 1678 AATCATGTGCTGCGGCCGCTCGACAATCTTGCCATCGAGCTTGAGTAGGTAAGACCGCTC 1619
Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63895
|| || || ||||||||||| | ||| ||||| || ||||| | ||| ||||
Sbjct 1618 CAGTGTCTTGAAACCAAAATATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCGA 1562
>seq2400
Length=47555
Score = 113 bits (124), Expect = 6e-20
Identities = 156/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || || ||||| ||| |||||| |||||||| | | ||| | ||||| ||
Sbjct 7658 AACAGCAGGCAAGCGAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATAAGCTCGTTGGAG 7599
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || || ||||| ||||| ||||| || ||||| || ||||||| ||| | |||
Sbjct 7598 AAGGTCAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAAGAGAAGGCACCG 7539
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749
|||||||| || || || || ||||| || | || | || || | || ||
Sbjct 7538 CTGAAGAAGATGCCCTCCACAGCGGCAAAAGCGACCAGGCGCTGAGCAAAGGTGGACTCG 7479
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
| ||| |||||||| |||||||||||||||||||
Sbjct 7478 CGGTCTGAGATCCACTTGAGAGCCCAATCGGCCTTCTT 7441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629796446001360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |