Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1920 102 6e-17 >seq1920 Length=25525 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| || | || ||||| |||| |||||||||||| || | |||||||||| Sbjct 16717 CGCCACCACGGAGCCGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGG 16776 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | | || ||| | || || | || |||||||| || ||||| ||||| || || | || Sbjct 16777 AGAGAGTCCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 16836 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| ||||| || | | ||||||| ||||| Sbjct 16837 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGA 16896 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || || |||||||| || || ||||| Sbjct 16897 CCTCAAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381357110979846