Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2494 167 3e-36 seq2400 140 5e-28 >seq2494 Length=11727 Score = 167 bits (184), Expect = 3e-36 Identities = 349/515 (68%), Gaps = 4/515 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 |||||||||| ||| |||| | | || |||||| | | ||||| | | | || Sbjct 1958 ACAAACGGCACGTCCAATGGCATCATCCCTATGCTCCGTGTCTACAACAACACGGCTCGC 2017 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || |||||||| || || || || |||||| | | ||||| | || |||||| Sbjct 2018 TATGTGGACCAGGGCGGAAACAAGCGCCCGGGCGCTTTCTGCATCTACCTAGAGCCTTGG 2077 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || || || || ||||| || | || ||||||||||| |||| || ||| || Sbjct 2078 CATGCTGATGTCTTTGAGTTCCTTGACCTGCGCAAAAACCATGGCAAGGAGGAGATTCGT 2137 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || |||| || |||||| | || ||| ||||||||||||| || | | Sbjct 2138 GCTCGCGATCTGTTCCTGGCGCTCTGGATCCCTGATCTGTTCATGAAGCGGGTTGAGAAG 2197 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| | |||| || ||||||||| || || ||||||||| | || || ||| Sbjct 2198 AACGGCGAGTGGACGCTGATGTGCCCCAACGAGTGTCCCGGTCTGGCGGACGTCTACGGC 2257 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTC 97166 || |||||||||||| ||| | ||||||| || || || | | | ||| Sbjct 2258 GACGAGTTTGAGGCCCTGTATGAGAAGTACGAGCGCGAAGGTCGTGGCCGCAAAAAGGTC 2317 Query 97167 GATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | || | |||| || ||| | || | | ||||||| ||||| || | ||||| Sbjct 2318 AAGGC-CCAGAAGCTCTGGTACGCAGTTCTCGAGGCTCAGACGGAGACGGGCAATCCGTT 2376 Query 97226 CATTCTCTACAAGGA-TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| || || || ||||| |||||||| || | ||||||||| Sbjct 2377 CATGCTCTACAAGGACCACTGT-AACCGCAAGAGCAACCAGAAGAACCTAGGCACCATCC 2435 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| |||||||||| ||||| |||||| Sbjct 2436 GCAGCTCCAACTTGTGCACGGAGATTGTGGAGTAC 2470 >seq2400 Length=47555 Score = 140 bits (154), Expect = 5e-28 Identities = 210/291 (72%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| |||| || || ||||| | || ||| |||| || Sbjct 7034 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCGTTCTGGACTGCTGAGGAGATCGACCTC 7093 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| ||| |||| ||| | | || ||| || |||||| || | ||| Sbjct 7094 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTTCTTCGTCTCG 7153 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| |||| |||||||||| |||||| || ||||||||||| || || ||||| || Sbjct 7154 CACATCCTGGCGTTCTTTGCCGCCTCCGACGGCATCGTCAACGAGAACCTAGTTGA-GCG 7212 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| | ||| | ||| | || |||| ||| ||||||||||| ||||| ||||| Sbjct 7213 CTTCAGTGCTGAG--GTCCAGGTGCCGGAGG-CTCGCTGCTTTTACGGCTTCCAGATCAT 7269 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| |||||||| ||||| || | ||||| || || |||| ||||| Sbjct 7270 GATGGAGAACGTCCACTCCGAGACATACTCCCTGCTCATCGACACCTACAT 7320 Score = 118 bits (130), Expect = 2e-21 Identities = 289/435 (66%), Gaps = 21/435 (5%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||| || || ||||| || |||||||||||||| ||| || | ||||||| Sbjct 7501 CTGGTCGCTTTTGCCGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTCTCTTCCATCTTC 7560 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| ||||||||||| || ||||| || ||||| | |||||| |||| ||||| Sbjct 7561 TGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTGACCTTCTCCAACGAGCTTATTTCTCGT 7620 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 ||||||||||| ||| ||||| || || ||||| || | ||||| | Sbjct 7621 GACGAGGGCCTGCACACCGACTTCGCTTGCCTGCTGTTCTCTC----ATCTG------AA 7670 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | | | ||||| | || | | || | || | |||||| || | ||| || || Sbjct 7671 GAACCGCCCCAGCAAGGAGATGATCCAGGAGATAATCGTCGATGCTGTCAAGATTGAGCA 7730 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || ||||| |||| || | || | |||||||||| || || ||| Sbjct 7731 GGAGTTCCTCACCGAGGCCCTTCCCTGCGCTCTGCTCGGCATGAACTCCACACTCATGAA 7790 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAG 125780 ||||||| ||||| || || || || || ||| |||| | ||| ||| Sbjct 7791 GCAGTACATTGAGTTCGTTGCCGACCGCCTTCTG-----GTTGCCCTCGGCAATGATAAG 7845 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 | ||| ||| || ||||| || |||||| | ||| || || | || |||||| Sbjct 7846 GTGTACCGTTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACC 7905 Query 125841 AACTTTTTCGAGAAG 125855 ||||| ||||||||| Sbjct 7906 AACTTCTTCGAGAAG 7920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741034309674120