Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2494 167 3e-36
seq2400 140 5e-28
>seq2494
Length=11727
Score = 167 bits (184), Expect = 3e-36
Identities = 349/515 (68%), Gaps = 4/515 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|||||||||| ||| |||| | | || |||||| | | ||||| | | | ||
Sbjct 1958 ACAAACGGCACGTCCAATGGCATCATCCCTATGCTCCGTGTCTACAACAACACGGCTCGC 2017
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
|| || |||||||| || || || || |||||| | | ||||| | || ||||||
Sbjct 2018 TATGTGGACCAGGGCGGAAACAAGCGCCCGGGCGCTTTCTGCATCTACCTAGAGCCTTGG 2077
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
|| || || || ||||| || | || ||||||||||| |||| || ||| ||
Sbjct 2078 CATGCTGATGTCTTTGAGTTCCTTGACCTGCGCAAAAACCATGGCAAGGAGGAGATTCGT 2137
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046
|| | || |||| || |||||| | || ||| ||||||||||||| || | |
Sbjct 2138 GCTCGCGATCTGTTCCTGGCGCTCTGGATCCCTGATCTGTTCATGAAGCGGGTTGAGAAG 2197
Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106
||| | |||| || ||||||||| || || ||||||||| | || || |||
Sbjct 2198 AACGGCGAGTGGACGCTGATGTGCCCCAACGAGTGTCCCGGTCTGGCGGACGTCTACGGC 2257
Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTC 97166
|| |||||||||||| ||| | ||||||| || || || | | | |||
Sbjct 2258 GACGAGTTTGAGGCCCTGTATGAGAAGTACGAGCGCGAAGGTCGTGGCCGCAAAAAGGTC 2317
Query 97167 GATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225
| || | |||| || ||| | || | | ||||||| ||||| || | |||||
Sbjct 2318 AAGGC-CCAGAAGCTCTGGTACGCAGTTCTCGAGGCTCAGACGGAGACGGGCAATCCGTT 2376
Query 97226 CATTCTCTACAAGGA-TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284
||| ||||||||||| || || || ||||| |||||||| || | |||||||||
Sbjct 2377 CATGCTCTACAAGGACCACTGT-AACCGCAAGAGCAACCAGAAGAACCTAGGCACCATCC 2435
Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||||| |||||||||| ||||| ||||||
Sbjct 2436 GCAGCTCCAACTTGTGCACGGAGATTGTGGAGTAC 2470
>seq2400
Length=47555
Score = 140 bits (154), Expect = 5e-28
Identities = 210/291 (72%), Gaps = 8/291 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||| |||| || || ||||| | || ||| |||| ||
Sbjct 7034 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCGTTCTGGACTGCTGAGGAGATCGACCTC 7093
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| ||| |||| ||| | | || ||| || |||||| || | |||
Sbjct 7094 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTTCTTCGTCTCG 7153
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| |||| |||||||||| |||||| || ||||||||||| || || ||||| ||
Sbjct 7154 CACATCCTGGCGTTCTTTGCCGCCTCCGACGGCATCGTCAACGAGAACCTAGTTGA-GCG 7212
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254
||| | ||| | ||| | || |||| ||| ||||||||||| ||||| |||||
Sbjct 7213 CTTCAGTGCTGAG--GTCCAGGTGCCGGAGG-CTCGCTGCTTTTACGGCTTCCAGATCAT 7269
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||| |||||||| ||||| || | ||||| || || |||| |||||
Sbjct 7270 GATGGAGAACGTCCACTCCGAGACATACTCCCTGCTCATCGACACCTACAT 7320
Score = 118 bits (130), Expect = 2e-21
Identities = 289/435 (66%), Gaps = 21/435 (5%)
Strand=Plus/Plus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
||||| || || ||||| || |||||||||||||| ||| || | |||||||
Sbjct 7501 CTGGTCGCTTTTGCCGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTCTCTTCCATCTTC 7560
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||||| ||||||||||| || ||||| || ||||| | |||||| |||| |||||
Sbjct 7561 TGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTGACCTTCTCCAACGAGCTTATTTCTCGT 7620
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605
||||||||||| ||| ||||| || || ||||| || | ||||| |
Sbjct 7621 GACGAGGGCCTGCACACCGACTTCGCTTGCCTGCTGTTCTCTC----ATCTG------AA 7670
Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665
| | | ||||| | || | | || | || | |||||| || | ||| || ||
Sbjct 7671 GAACCGCCCCAGCAAGGAGATGATCCAGGAGATAATCGTCGATGCTGTCAAGATTGAGCA 7730
Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725
||||| || ||||| |||| || | || | |||||||||| || || |||
Sbjct 7731 GGAGTTCCTCACCGAGGCCCTTCCCTGCGCTCTGCTCGGCATGAACTCCACACTCATGAA 7790
Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAG 125780
||||||| ||||| || || || || || ||| |||| | ||| |||
Sbjct 7791 GCAGTACATTGAGTTCGTTGCCGACCGCCTTCTG-----GTTGCCCTCGGCAATGATAAG 7845
Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840
| ||| ||| || ||||| || |||||| | ||| || || | || ||||||
Sbjct 7846 GTGTACCGTTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACC 7905
Query 125841 AACTTTTTCGAGAAG 125855
||||| |||||||||
Sbjct 7906 AACTTCTTCGAGAAG 7920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741034309674120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |